| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,271,676 – 7,271,786 |
| Length | 110 |
| Max. P | 0.817373 |
| Location | 7,271,676 – 7,271,786 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 85.53 |
| Shannon entropy | 0.24676 |
| G+C content | 0.61323 |
| Mean single sequence MFE | -37.14 |
| Consensus MFE | -24.06 |
| Energy contribution | -24.22 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7271676 110 - 21146708 CUGAGAGCGG--AACUCUCGCCUACGCGAUCGUGCUGACCGCCAAAUGCAAUAUCCGCCGCUCCACCUGGUGGCGCUCUCAAUUCUCAAUUCUGCGGUCUUCUUGCUCUCGC ..((((((((--.((..((((....))))..)).))((((((..(((........(((((((......))))))).............)))..)))))).....)))))).. ( -36.20, z-score = -2.44, R) >droSim1.chr2R 5805808 110 - 19596830 CGGAGAGCGG--AACUCUCGCCCACGCGAUCGUGCUGACCGCCAAAUGCAAUACCCGCCGCUCCACCUGGUGGCGCUCUCUAUUCUCCAUUCUGCGGUCUUCUCGCUCUCGC ..((((((((--(((..((((....))))..))...((((((..((((.((((..(((((((......))))))).....))))...))))..)))))).)).))))))).. ( -41.30, z-score = -3.18, R) >droSec1.super_1 4828373 110 - 14215200 CGGAGAGCGG--AACUCUCGCCCAAGCGAUCGUGCUGACCGCCAAAUGCAAUACCCGCCGCUCCACCUGGUGGCGCUCUCAAUUCUCUAUUCUGCGGUCUUCUCGCUCUCGC ..((((((((--(((..((((....))))..))...((((((..((((.......(((((((......)))))))............))))..)))))).)).))))))).. ( -38.41, z-score = -2.25, R) >droYak2.chr2R 11450783 108 + 21139217 CGGAGAGCGG--AUCUCUCGCCCACGCGAUCGUGCUGACCACCCACUGCAAUGCACGCCGCUCCACCUGGUGGCGCUCUCAAUUCUCCAUUCUCCUGUGCUCGCUCUCCC-- .(((((((((--.....((((....))))..((((....((.....))....))))((((((......))))))..........................))))))))).-- ( -33.90, z-score = -1.70, R) >droEre2.scaffold_4845 4066138 110 + 22589142 CGGAGAGCGAUUCUCUCUCGCCCACGCGAUCGUGCUGACCACCCACUGCAAUGCCAUCCGCUCCACCUGGUGGCGCUCUCGAUUCAUCAUUUUCCGGUGCUCGCUCUCCA-- .(((((((((.......((((....))))..(..(((...............((((((.(......).))))))......((....))......)))..)))))))))).-- ( -35.90, z-score = -2.06, R) >consensus CGGAGAGCGG__AACUCUCGCCCACGCGAUCGUGCUGACCGCCAAAUGCAAUACCCGCCGCUCCACCUGGUGGCGCUCUCAAUUCUCCAUUCUGCGGUCUUCUCGCUCUCGC ..(((((((........((((....)))).........((((((...((..........))......)))))))))))))................................ (-24.06 = -24.22 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:08 2011