| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,264,157 – 7,264,271 |
| Length | 114 |
| Max. P | 0.822483 |
| Location | 7,264,157 – 7,264,271 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.36 |
| Shannon entropy | 0.35326 |
| G+C content | 0.65906 |
| Mean single sequence MFE | -51.62 |
| Consensus MFE | -36.11 |
| Energy contribution | -37.55 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.822483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7264157 114 + 21146708 GCACUUUCAAAAGCAGCGGGAGCAGGAGGAGGCCCGAGUUCUCGAGGAGGCGGAGGCCGCCGAAGCGGCUGCUGCAGCCGCAAUCCUUGAGAGCGGCGAAAAGGAUGGUCGCAA (((((.((....((..((((..(.....)...)))).((((((((((((((((...)))))...(((((((...)))))))..))))))))))).))......)).))).)).. ( -53.50, z-score = -2.16, R) >droSim1.chr2R 5798542 114 + 19596830 GCACUUCCAAAAGCAGCGGGAGCAGGAGGAGGCCCGGGUACUCGAGGAGGCGGAGGCUGCCGAAGCGGCUGCUGCAGCCGCAAUCCUCGAGAGCGGCGAAAAGGAGGGUCGCAA ((.(((((....((..((((..(.....)...)))).((.(((((((((((((...)))))...(((((((...)))))))..)))))))).)).)).....)))))...)).. ( -52.30, z-score = -1.45, R) >droEre2.scaffold_4845 4058487 114 - 22589142 GCACUUCCAAAAGCAGCGCGAGCAGGAGGAGGCCCGGGUUCUCGAGGAGGCGGAGGCCGCUGAGGCGGCCGCUGCAGCCGCCAUCCUCGAGAGCGGCGAGAAGGAGGGUCGCAA ((.(((((.......((....)).))))).(((((..((((((((((((((((.((((((....)))))).......))))).)))))))))))..(.....)..))))))).. ( -61.50, z-score = -2.55, R) >droGri2.scaffold_15245 7113277 102 + 18325388 GCACUUUCAAAAGCAGCGCGAGCACGAGGAGGCCAAGGUGC---AGGAAGCCGCCGAUGCUGAGGCGGAGGCAGCCGCGGCGCUCACUGAGAAGGAUGCUAAGAA--------- ((((((((.......((....))...((((((((..(((((---......(((((........)))))..))).))..))).))).))..))))).)))......--------- ( -39.20, z-score = -0.48, R) >consensus GCACUUCCAAAAGCAGCGCGAGCAGGAGGAGGCCCGGGUUCUCGAGGAGGCGGAGGCCGCCGAAGCGGCUGCUGCAGCCGCAAUCCUCGAGAGCGGCGAAAAGGAGGGUCGCAA ...(((((.......((....))........(((...(((((((((((.((((.((((((....)))))).......))))..)))))))))))))).....)))))....... (-36.11 = -37.55 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:15:07 2011