| Sequence ID | dm3.chr2L |
|---|---|
| Location | 286,649 – 286,753 |
| Length | 104 |
| Max. P | 0.971532 |
| Location | 286,649 – 286,753 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.71 |
| Shannon entropy | 0.56866 |
| G+C content | 0.42459 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -14.46 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 286649 104 - 23011544 -UCUGAAGUGGAAAUACUUUGUACUACGGCGAUUGAGAGUGCGGGUGAUAAGCGCACCUUAUCAGUUUCAAAGCGAAAGCGAAAAUACAUACAGUGAACAGUCGA -...((((((....))))))......((((..((((((.((.(((((.......)))))...)).)))))).((....))....................)))). ( -25.50, z-score = -0.79, R) >droSim1.chr2L 304819 104 - 22036055 -UCUGAAGUGGAAAUACUUUGUACUACGGCGAUUGAGAGUGCGGCUGAUAAGCGCACCUUAUCAGUUUCAAAGCGAAAGCGAAAAUACAUACAGUGAACAGUCGA -.(((.((((.((.....)).)))).)))((((((....((..(((((((((.....)))))))))..))..((....))..................)))))). ( -28.40, z-score = -1.64, R) >droSec1.super_14 284433 104 - 2068291 -UCUGAAGUGGAAAUACUUUGUACUACGGCGAUUGAGAGUGCGGCUGAUAAGCGCACCUUAUCAGUUUCAAAGCGAAAGCGAAAAUACAUACAGUGAACAGUCGA -.(((.((((.((.....)).)))).)))((((((....((..(((((((((.....)))))))))..))..((....))..................)))))). ( -28.40, z-score = -1.64, R) >droYak2.chr2L 280965 104 - 22324452 -UGUGAAGUGGAAAUACUUUGUACUACGGCGAUUGAGAGUGCGGCUGAUAAGCACACCUUAUCAGUUCCACAGCGAAAGCGAAAAUACAUACAGUGAUCAGUCGA -((..(((((....)))))..))......(((((((..(((..(((((((((.....)))))))))..))).((....)).................))))))). ( -34.20, z-score = -3.43, R) >droEre2.scaffold_4929 337819 103 - 26641161 -UCUGAAGUGG-AAUACUGUGUACUACGGCGAUUCAGAGUGCGGCUGAUAAACGCACCUUAUCAGUUUCAAAGCGAAAGCGAAAAUACAUACAGUGAACAGUCGA -..(((..((.-..((((((((........(((..((.(((((.........))))))).))).((......((....))......))))))))))..)).))). ( -25.50, z-score = -0.72, R) >droAna3.scaffold_12943 52303 91 + 5039921 -UCUCGAGUGGCUAUACUUUGUACCACGGCGA------------CAGAUAAGAGUGCCUUAUCAGGCUCAAAGUGAACGC-AAAAUACAUACAGUAGGUGCUCGA -..(((((((.((((((((((..((..(....------------).((((((.....)))))).))..))))))(....)-............)))).))))))) ( -25.10, z-score = -1.25, R) >droVir3.scaffold_12963 11410471 78 + 20206255 UUUCUGUGUAUCAAU-CUCAAUACGAAUUUACUUU--UGUGCCGCUGAUAAGCG-ACGUUAUCAGCAUACAUAUAUAUAUGU----------------------- ....(((((((....-.....((((((......))--))))..((((((((...-...))))))))))))))).........----------------------- ( -17.50, z-score = -2.09, R) >consensus _UCUGAAGUGGAAAUACUUUGUACUACGGCGAUUGAGAGUGCGGCUGAUAAGCGCACCUUAUCAGUUUCAAAGCGAAAGCGAAAAUACAUACAGUGAACAGUCGA ....((((((....))))))......((((.............(((((((((.....)))))))))......((....))....................)))). (-14.46 = -15.20 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:28 2011