| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,205,013 – 7,205,110 |
| Length | 97 |
| Max. P | 0.997746 |
| Location | 7,205,013 – 7,205,110 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 69.28 |
| Shannon entropy | 0.59902 |
| G+C content | 0.41854 |
| Mean single sequence MFE | -20.24 |
| Consensus MFE | -9.34 |
| Energy contribution | -10.54 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.17 |
| SVM RNA-class probability | 0.997746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7205013 97 - 21146708 CUAUAGUUUCGAUAUCCAAAAUCCA-AAAGCCA-GGUUGCGGUGAAAAUGCCGCGAUCAAGCUAGAAAACCCCUUUCCAAGUACUCAAAAUCA--AACCAU------- .....((((.(((............-..(((..-(((((((((......)))))))))..))).((((.....))))............))))--)))...------- ( -20.10, z-score = -3.08, R) >droWil1.scaffold_180745 803629 108 - 2843958 CAAUUAUUUCGUUUGUUCAGAGCAAAAAACACGCAGUCAGUGGACCAAUAAGGGAAUAUAUCUAGAAUGUGGUUUUAAACACGAAACAUUCCAUUGACAGUAAUACAU ..((((((...(((((.....))))).........(((((((((((.....))..............((((........))))......))))))))))))))).... ( -21.10, z-score = -1.55, R) >droSim1.chr2R 5754455 97 - 19596830 CAAUAGUUUCGAUAUCCAAAAUCCA-AAAGCCA-GGUUGCGGUGAAAAUGCCGCGAUCAAGCUAGAAAACCCCUUUCCAAGUACUCCAAAUCA--AACCAU------- .....((((.(((............-..(((..-(((((((((......)))))))))..))).((((.....))))............))))--)))...------- ( -20.10, z-score = -3.22, R) >droSec1.super_1 4768854 97 - 14215200 CAAUAGUUUCGAUAUCCAAAAUCCA-AAAGCCA-GGUUGCGGUGAAAAUGCCGCGAUCAAGCUAGAAAAUCCCUUUCCAAGUACUCCAAAUCA--AACCAU------- .....((((.(((............-..(((..-(((((((((......)))))))))..))).((((.....))))............))))--)))...------- ( -20.10, z-score = -3.20, R) >droYak2.chr2R 19201041 95 + 21139217 CAACAGUUUCGAUACCC-AAAUCCA-AAAGCCA-GGUUGCGGUGAAAAUGCCGCGAUCAAGCUAGAAAACCCCUUUCCAAGUACUCCAAAUCG--AA-CAU------- .....(((.((((....-.......-..(((..-(((((((((......)))))))))..))).((((.....))))............))))--))-)..------- ( -22.80, z-score = -3.69, R) >droEre2.scaffold_4845 4001068 96 + 22589142 CAAUAGUUUCCAUACCC-AAAUCCC-AAAGCCA-GGUUGCGGUGAAAAUGCCGCGAUCCAGCUAGAAAACCCCUUUCCAAGUACUCCAAAUCG--AACCAU------- .....((((........-.......-..(((..-(((((((((......)))))))))..))).((((.....))))...............)--)))...------- ( -18.20, z-score = -2.57, R) >droAna3.scaffold_13266 908163 98 - 19884421 ---UAGUUUCCAGAUCCAAAAGCCACCGAGUCG-GG--GCUAAAAUAAUGCCGCGAAUAGGCUAGAACUCCACUUUUGACGU--UCUACACAA--AAAUAUUAAACAC ---..((((...........((((......(((-.(--((.........))).)))...))))(((((((.......)).))--)))......--.......)))).. ( -19.30, z-score = -1.28, R) >consensus CAAUAGUUUCGAUAUCCAAAAUCCA_AAAGCCA_GGUUGCGGUGAAAAUGCCGCGAUCAAGCUAGAAAACCCCUUUCCAAGUACUCCAAAUCA__AACCAU_______ ............................(((...(((((((((......)))))))))..)))............................................. ( -9.34 = -10.54 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:59 2011