| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,193,972 – 7,194,065 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 7,193,972 – 7,194,065 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 63.00 |
| Shannon entropy | 0.80149 |
| G+C content | 0.40598 |
| Mean single sequence MFE | -16.52 |
| Consensus MFE | -6.30 |
| Energy contribution | -6.10 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 7193972 93 - 21146708 ---------AAUAGUUUUCCUAAUACAAAGUUAUCGAUCAUCUUUUCAGCUCCAAAGUUUUUUCAUCAUCUCAGACGAUGUGAUGGACAACAGCACCACCAG ---------.......................................(((.....(((..((((((((.((....)).)))))))).))))))........ ( -10.80, z-score = 0.14, R) >droSim1.chr2R 5743673 92 - 19596830 ---------AGUAGUUUUCCUACUACAAAGUUUUUCGAUAUC-UUCCAGCUCCAAAGUUUCUUUAUCAUCUCAGACGAUGUGAUGGACAACAGCACCACCAG ---------.(((((......)))))................-.....(((.....(((..((((((((.((....)).)))))))).))))))........ ( -14.10, z-score = -0.62, R) >droSec1.super_1 4757915 92 - 14215200 ---------AGUAGUUUUCCUACUACAAAGUUAUCCGUCAUC-UUCCAGCUCCAAAGUUUUUUCAUCAUCUCAGACGAUGUGAUGGACAACAGCACCACCAG ---------.(((((......)))))...(((.(((((((..-....((((....)))).......((((......))))))))))).)))........... ( -19.10, z-score = -2.96, R) >droYak2.chr2R 19189806 91 + 21139217 ---------CGUAGUUUUCCUACUACAAA-UUAUCGGACAUU-UUUCAGCUCCAGAGUUUCUUCAUCAUCUCAGACGAUGUGAUGGACAACAGCACCACCAG ---------.(((((......)))))...-.....((((...-.....).)))...(((..((((((((.((....)).)))))))).)))........... ( -17.30, z-score = -1.40, R) >droEre2.scaffold_4845 3989924 92 + 22589142 ---------ACUAGUUUUCCUAACACAAAAUUAUCGAUUAUC-UUCCAGCUUCAGAGUUUCUUCAUCAUCUCAGACGAUGUGAUGGACAACAGCAUCACCAG ---------..(((((((........))))))).........-.....(((.....(((..((((((((.((....)).)))))))).))))))........ ( -11.80, z-score = 0.18, R) >droAna3.scaffold_13266 897454 102 - 19884421 GCUGGUCCAAGGGCCCUCCAUUCCACUUCGGUUCUCGUUCUACUUGCAGCUCCAAAGUUUCUUCAUUAUCUCUGACGAUGUGAUGGACAAUAGCACCACCAG (((((((....)))).(((((..(((((.((..((.((.......))))..)).)))).((.(((.......))).)).)..)))))....)))........ ( -20.70, z-score = 0.23, R) >dp4.chr3 14052888 81 - 19779522 --------------------CAUAAUCAGAGUCACAUUAU-AAUUGCAGCUUCAGAGCUUCUUCAUAAUCUCUGACGACGUGAUGGACAACAGCACAACACG --------------------.....((((((....(((((-....(.((((....)))).)...)))))))))))...((((.((..(....)..)).)))) ( -15.30, z-score = -1.02, R) >droPer1.super_4 5896930 81 + 7162766 --------------------CAUAAUCAGAGUCACAUUAU-AAUUGCAGCUUCAGAGCUUCUUCAUAAUCUCUGACGACGUGAUGGACAACAGCACAACACG --------------------.....((((((....(((((-....(.((((....)))).)...)))))))))))...((((.((..(....)..)).)))) ( -15.30, z-score = -1.02, R) >droWil1.scaffold_180745 791948 98 - 2843958 ----UUUAUUCUGAUAAAAGAGCAUUCAAGAAAUUCAUUUUGUUUCUAGCUACAAAGUUUCUUCAUCAUGUCGGAUGAUGUAAUGGACAAUAGCACGACUAG ----....((((......))))......((((((.......)))))).((((....(((..((((((((.....)))))).))..)))..))))........ ( -15.70, z-score = 0.31, R) >droVir3.scaffold_10324 1282500 92 + 1288806 ----------GAGAGUUGAGCAUAAUCUAACUAUAGUUGUCACUUGCAGCUUCAGAGUUUCUUUAUUAUAUCGGACGAUGUUAUGGACAACAGCACAACAAG ----------....((((.((.........((..((((((.....))))))..)).(((..(((((.(((((....))))).))))).))).)).))))... ( -19.40, z-score = -0.83, R) >droMoj3.scaffold_6496 25038021 82 + 26866924 ------------------AAUAUUUGAAAAUUGUCCAUAAU--UUGCAGCUGCAAAGUUUCUUCAUUAUAUCGGAUGAUGUGAUGGAUAACAGUACAACGCG ------------------............((((.(....(--((((....)))))(((..(((((((((((....))))))))))).))).).)))).... ( -17.30, z-score = -1.13, R) >triCas2.ChLG7 3171424 91 - 17478683 ----------AUUGGGUAAUCGGAUUCAAAGUA-AGGUUUCGCUUGCAGUUGCAAGGCUUCUUUUUGGUCACGGAUGACAUCAUUGACCGGUCGGAAAUGCG ----------.((((((......))))))....-........(((((....)))))((((((..(((((((..(((...)))..)))))))..))))..)). ( -21.40, z-score = 0.09, R) >consensus __________GUAGUUUUCCUACAACAAAAUUAUCCGUUAUA_UUGCAGCUCCAAAGUUUCUUCAUCAUCUCAGACGAUGUGAUGGACAACAGCACCACCAG ...............................................((((....))))..((((((((.((....)).))))))))............... ( -6.30 = -6.10 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:59 2011