| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,162,623 – 7,162,734 |
| Length | 111 |
| Max. P | 0.565084 |
| Location | 7,162,623 – 7,162,734 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 54.79 |
| Shannon entropy | 0.79908 |
| G+C content | 0.39613 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -5.76 |
| Energy contribution | -6.48 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.23 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7162623 111 - 21146708 GAUAACAUUGUGAGUGCCACU--GGAUUAUAGAAACCCCUAGGGGUAACACCUUGCACUUGAAAGCAGUGUUAAGGAAUAGAGAAAUGUCGUUUCUCAUCAAUUUAAAGAUUU ..(((((((((((((((..((--(.....)))..((((....))))........))))))....))))))))).......(((((((...)))))))................ ( -28.80, z-score = -2.18, R) >droAna3.scaffold_13266 871016 102 - 19884421 GAGAACAUUGUGAGUGGGUUUUGGAAUAAAGGCCUAUCUUAGGAUUGACAUUCAAGGAUCAAGGAUAUU-UGGAUUAUCAGCAAGGGUCUUUUUUCAAGACCU---------- ...............(((((((((((.(((((((((((((.((((....)))).)))))....((((..-.....)))).....)))))))))))))))))))---------- ( -27.20, z-score = -1.60, R) >droEre2.scaffold_4845 3963293 85 + 22589142 GACAACAUUGUGAGUGCAGCU--GG---AAUGCAA--AUUAUGGCAGCCA-CUUGCACUUGAAAA-AGUGUUUAGGCAGAGGGAAAUUCGAAUU------------------- ...((((((.(((((((((.(--((---..(((..--......))).)))-.)))))))))....-))))))......(((.....))).....------------------- ( -20.80, z-score = -0.71, R) >droYak2.chr2R 19161947 104 + 21139217 GAGAACAUUGUGAGUGCAACU--GGGUUAUUGAAA--CCUAGGGCAAACACCUUGCACUUGAAAA-AGUGUUAUGGAACAGAGAAAAUCCGUUUUUUUAUCACGGAUUU---- ........(((...(((..((--(((((.....))--))))).))).)))((..((((((....)-)))))...))........((((((((.........))))))))---- ( -30.00, z-score = -3.01, R) >droSim1.chr2R 5715523 85 - 19596830 GACAACAUUGUGAGUGCCACU--GGAUUAUAGAAACCCUUAGGGGUAACUCCUUGCACUUGAAAGCAGUGUUAAGGAUUAAGGAUUU-------------------------- ...((((((((((((((....--(((........((((....))))...)))..))))))....))))))))...............-------------------------- ( -20.70, z-score = -0.86, R) >consensus GACAACAUUGUGAGUGCAACU__GGAUUAUAGAAA__CUUAGGGCUAACACCUUGCACUUGAAAA_AGUGUUAAGGAACAGAGAAAUUCCGUUU___________________ ...((((((((((((((..(....)...............((((......))))))))))....))))))))......................................... ( -5.76 = -6.48 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:58 2011