| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,158,907 – 7,158,999 |
| Length | 92 |
| Max. P | 0.551524 |
| Location | 7,158,907 – 7,158,999 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.38 |
| Shannon entropy | 0.52153 |
| G+C content | 0.55371 |
| Mean single sequence MFE | -30.06 |
| Consensus MFE | -13.46 |
| Energy contribution | -15.05 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7158907 92 + 21146708 GCCACACUGACUCAUC-CGGCGACUGUGGCA------CAU----GCAACCGAAACAAGCAACGCCUGCCCC-UUGGGCCGGAAUAUCUUGAGGAGUCUGUGAGA- ....(((.(((((.((-((((.......((.------...----))..((((.....(((.....)))...-))))))))))....(....)))))).)))...- ( -27.20, z-score = -0.33, R) >droSim1.chr2R 5711824 92 + 19596830 GCCACACUGACUCAUC-CGGCGACUGGGGCA------CAU----GCAACCGAAACAACCAACGCCUGCCCC-UUGGGCCGGAAUAUCUUGAGGAGUCUGUGAGA- ....(((.(((((.((-((((....((((((------...----((................)).))))))-....))))))....(....)))))).)))...- ( -32.89, z-score = -2.08, R) >droSec1.super_1 4727041 92 + 14215200 GCCACACUGACUCAUC-CGGCGACUGGGGCA------CAU----GCAACCGAAACAACCAACGCCUGCCCC-UUGGGCCGGAAUAUCUUGAGGAGUCUGUGAGA- ....(((.(((((.((-((((....((((((------...----((................)).))))))-....))))))....(....)))))).)))...- ( -32.89, z-score = -2.08, R) >droYak2.chr2R 19158134 91 - 21139217 GCCACACUGACUCAUC-CGGCGACUGUGGCA------CAU----GCAACUGAA-CAACCAACGCCUGCCCC-UUUGGCCAGAAUGCCUCGAUGAGUCUGUGGGA- .((.(((.((((((((-.((((..(.((((.------((.----(((..((..-.......))..)))...-..)))))).).))))..)))))))).))))).- ( -31.30, z-score = -2.23, R) >droEre2.scaffold_4845 3954329 102 - 22589142 GCCGCACUGACUCAUC-CGGCGGCUGUGGCAUUGUGGCAUUGUGGCAACCGAG-CAACCAACGCCUGCCCCGUUGGGCCGGAAUAUCAUGAGGAGUCUGUGAGA- ..(.(((.(((((.((-((((((.(((.(((.((...)).))).))).))...-...((((((.......))))))))))))....(....)))))).))).).- ( -37.90, z-score = -0.12, R) >droWil1.scaffold_180700 462572 89 + 6630534 ----------GUCAUCUCAACACAUGUGCCG------CAAAUUUAAACCAAAAAGAGUCUGAGACUGAGACUGAGACUAAAAAUGGCUGAGAGACUCUAAAAAAA ----------(((.(((((.....((.....------))........(((.....(((((.((.......)).))))).....))).)))))))).......... ( -18.20, z-score = -1.83, R) >consensus GCCACACUGACUCAUC_CGGCGACUGUGGCA______CAU____GCAACCGAAACAACCAACGCCUGCCCC_UUGGGCCGGAAUAUCUUGAGGAGUCUGUGAGA_ ....(((.(((((.....((((.......................................)))).((((....))))..............))))).))).... (-13.46 = -15.05 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:57 2011