| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,132,843 – 7,132,933 |
| Length | 90 |
| Max. P | 0.927155 |
| Location | 7,132,843 – 7,132,933 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.28 |
| Shannon entropy | 0.45033 |
| G+C content | 0.41286 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -12.16 |
| Energy contribution | -13.83 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7132843 90 - 21146708 AUGAAUUGCGAUCUGAACUGCCUUUUAUAGCUCCAAGAGUGCAGUUCUUGUGCCUCUAAUUAUUACAUAUU------CGCAACUUGCAGAAGAGAA---- .....((((((...((((((((((((........))))).))))))).((((...........))))...)------)))))(((......)))..---- ( -20.20, z-score = -1.01, R) >droSim1.chr2R 5680228 94 - 19596830 AUGAACUGCGAUCUGAACUGCCUUUUAUACCUCUAAAAGUGCAGUUCUUGUGCCUCUAAUUAUUACGUAUU------CGCAACUUGCAAAAGAUACAUAA .......(((....(((((((((((((......)))))).)))))))...))).............(((((------.((.....))....))))).... ( -21.10, z-score = -3.31, R) >droSec1.super_1 4701342 94 - 14215200 AUGAACUGCGAUCUGAACUGCCUUUUAUAGCUCUAAAAGUGCAGUUCUUGUGCCUAUAAUUAUUACGUAUU------CGCAACUUGCAAAAGAUACAUAA (((...(((((...(((((((((((((......)))))).)))))))..((((.((.......)).)))))------)))).(((....)))...))).. ( -22.10, z-score = -2.68, R) >droYak2.chr2R 19127534 87 + 21139217 GUGAACUGCGAUCUGGACUGCCUUUUAUACCUCGAAAAGUGCAGUUCUUGUGCCUCUAA---UUACAUAUU------CGCAGCUUGCAGACGAGAA---- (..(.((((((...((((((((((((........))))).))))))).((((.......---.))))...)------))))).)..).........---- ( -25.90, z-score = -2.67, R) >droEre2.scaffold_4845 3926118 89 + 22589142 GUGAACUGCGAGCCAAACUGCCUUUUAUACCUC-AAAAGUGCAGUUCCUGCGCCUCUAAUUAUUACGUAUU------CGCAACUUGCUGACGAGAA---- (((((.((((.((..(((((((((((.......-))))).))))))...))..............))))))------)))..((((....))))..---- ( -18.96, z-score = -1.28, R) >droAna3.scaffold_13266 844371 90 - 19884421 ----ACUGC-AGCUGCCACGGCUUUUAUAGCCCACCGAGUGCACUUCGCGUCCAACUAAUUGAAAUUUAUUUUUAGCCGCAUCUUGUAGACCCGU----- ----.((((-((.(((...((((.....))))....(..(((.....)))..)......((((((.....))))))..)))..))))))......----- ( -17.00, z-score = -0.19, R) >consensus AUGAACUGCGAUCUGAACUGCCUUUUAUACCUCUAAAAGUGCAGUUCUUGUGCCUCUAAUUAUUACGUAUU______CGCAACUUGCAGAAGAGAA____ .....((((((...((((((((((((........))))).)))))))(((((.....(((........)))......))))).))))))........... (-12.16 = -13.83 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:53 2011