| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,125,741 – 7,125,850 |
| Length | 109 |
| Max. P | 0.911078 |
| Location | 7,125,741 – 7,125,850 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.86 |
| Shannon entropy | 0.46685 |
| G+C content | 0.56962 |
| Mean single sequence MFE | -40.94 |
| Consensus MFE | -24.82 |
| Energy contribution | -24.94 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7125741 109 + 21146708 CGGAUGGUGGAUACAAUCCCUGCAUGUUGACCUGAGGUGCUGGAUACAAUCCUGGAUUGGCUCCACCGAAUCCCUGCGGAGCGGGAUAUAGACCCGGGCUAACGCCACC-- (((.(((((((..((((((..((((.((.....)).)))).((((...)))).))))))..))))))).(((((.((...)))))))......)))(((....)))...-- ( -44.10, z-score = -2.64, R) >droSim1.chr2R 5673228 109 + 19596830 CAGAUGGUGGAUAUAGUCCCAGCAUGUUGACCUGAGGUGCUGGAUACAAUCCCGGAUUGGCUCCACCGAAUCCCUGCGGAGCGGGAUAUAGACCCGGGUUGACGCCACC-- .....(((((.....((((((((((.((.....)).))))))).......(((((.((((.....))))(((((.((...)))))))......)))))..))).)))))-- ( -41.30, z-score = -1.59, R) >droYak2.chr2R 19120560 109 - 21139217 CGGAUGGUGGAUACAAUCCUUGCAUGUUGACCUGAGGUGCUGGAUAAGGUCCCGGGUUGGCUCCACCGAAUCCCUGCGGGGCGGGAUAUAGACCCGGGCUCACGCCACC-- .((.(((((......((((..((((.((.....)).)))).))))..(..((((((((.......(((...(((....))))))......))))))))..).)))))))-- ( -43.32, z-score = -0.48, R) >droEre2.scaffold_4845 3919373 109 - 22589142 CGGAUGGUGGAUACAAUCCUUGCAUGUUGACCUGCGGUGCUGGAUACAGUGCCGGGUUGGCUCCGCCGAAUCCCUGCGGGGCGGGAUAUAGAGCCGGGCUCACGCCACC-- (((.(((((((..((((((..(((.(....).)))((..(((....)))..))))))))..))))))).(((((.((...)))))))......)))(((....)))...-- ( -48.60, z-score = -1.52, R) >droWil1.scaffold_180697 3523260 108 + 4168966 CAGAUGAAAGAUGAAAGAUUCGUUUGUUUGGCUAAAAAGCAGAAGCAUAAGCUGGCAUAAAGCCAGCA---UUAGGAGGCGUUGGAUAUAGACCAGGCAACACAGGACCUC ((((..((.((........)).))..)))).((((...((....))....((((((.....)))))).---))))(((((..(((.......)))(....)....).)))) ( -27.40, z-score = -1.84, R) >consensus CGGAUGGUGGAUACAAUCCUUGCAUGUUGACCUGAGGUGCUGGAUACAAUCCCGGAUUGGCUCCACCGAAUCCCUGCGGAGCGGGAUAUAGACCCGGGCUCACGCCACC__ (((.(((((((..((((((..((((.((.....)).)))).((........))))))))..))))))).(((((........)))))......)))(((....)))..... (-24.82 = -24.94 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:51 2011