| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,083,392 – 7,083,493 |
| Length | 101 |
| Max. P | 0.978855 |
| Location | 7,083,392 – 7,083,493 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 67.78 |
| Shannon entropy | 0.53035 |
| G+C content | 0.34740 |
| Mean single sequence MFE | -22.48 |
| Consensus MFE | -16.57 |
| Energy contribution | -17.75 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.978855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7083392 101 + 21146708 ACUGUCCAAUUUCUUUUCGUGUACAUUUCUACGCGUAUGUAGACUCGUCUAC----GUGUAUAUGUAUGUAUAUACGUAUUGCUUUAAUAGAUGAGUGCGUACCA ..................(((((......)))))((((((..((((((((((----((((((((....))))))))))...........)))))))))))))).. ( -27.70, z-score = -2.42, R) >droSim1.chr2R 5629588 105 + 19596830 AAUGACCAAUUUCUUUCCGUGUACAUUUCUACGCGUAUGUAGACUCGUCUACUUCUAUACAUAUGUAUGUACAUACGUGUUGCUUUCAUAGAUGAGUGCGUACCA ..................(((((......)))))((((((..(((((((((.........((((((((....))))))))........))))))))))))))).. ( -26.03, z-score = -1.99, R) >droSec1.super_1 4652882 105 + 14215200 AAUGACCAAUUUGUUUCCGUGUACAUUUCAACGCGUAUGUAGACUCGUCUACUUCUAUACAUAUGUAUGUACAUACGUGUUGCUUUCAUAGAUGAGUGCGUACCA ..................(.((((.....((((((((((((((....))......(((((....)))))))))))))))))((.((((....)))).))))))). ( -26.10, z-score = -1.50, R) >droAna3.scaffold_13266 797091 88 + 19884421 ---------ACUAUCUUAAUUUA-AUUUGUAAUUAUUUAUAAACA-AUUUCUCUCAGUGCUUAUAUACAAA-GUACAUGU-GUUUUUGUAGACGUGUCGCU---- ---------..............-.(((((((....)))))))..-..........((((((.......))-))))(..(-((((....)))))..)....---- ( -10.10, z-score = 0.27, R) >consensus AAUGACCAAUUUCUUUCCGUGUACAUUUCUACGCGUAUGUAGACUCGUCUACUUCUAUACAUAUGUAUGUACAUACGUGUUGCUUUCAUAGAUGAGUGCGUACCA ..................(((((......)))))((((((..(((((((((.........((((((((....))))))))........))))))))))))))).. (-16.57 = -17.75 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:48 2011