Locus 3686

Sequence ID dm3.chr2R
Location 7,081,152 – 7,081,245
Length 93
Max. P 0.996780
window5051 window5052

overview

Window 1

Location 7,081,152 – 7,081,245
Length 93
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.56
Shannon entropy 0.40588
G+C content 0.51211
Mean single sequence MFE -38.72
Consensus MFE -28.12
Energy contribution -29.30
Covariance contribution 1.19
Combinations/Pair 1.14
Mean z-score -2.70
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.98
SVM RNA-class probability 0.996780
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 7081152 93 + 21146708
---------------------------ACUGGAAACUCCGUCGAUCGACGGAAGCAUUACUCCUAAUGUCGGGGGCACUCCCAAAUCCAUCAGAGAAGUGCUCCCUCCGGAGUUUCCCCA
---------------------------...((((((((((((....)))(((.((((((....)))))).(((((((((.((..........).).)))))))))))))))))))))... ( -39.50, z-score =  -4.43, R)
>droEre2.scaffold_4845 3874804 118 - 22589142
AUAAUUAUUAAUAGGCACUCCUUGAUAAAUGGGAACUCCGUCGAUCGACGGAAGCAUUACUCGUAAUGUUGGGG-CACUCCCAA-UCCGGCAACGAAGUGCUCCACCCGGAGCUUCCCCA
....((((((..(((....)))))))))..((((((((((((....)))((.(((((((....)))))))((((-((((.....-..((....)).))))))))..)))))).))))).. ( -41.10, z-score =  -3.16, R)
>droYak2.chr2R 19076631 117 - 21139217
AAAGAAAUUAAUAGGCACUCGUUGGCAAAUGGGAAUUCCGUCGAUCAACGGAAGCAUUACUCGUAAUGUCGGA--CACUCCCAA-UCCGGCCACGAAGUGCUCCCACCGGAGUUUCCCCA
...((((((....(((((((((.(((...(((((.((((((......))))))((((((....))))))....--...))))).-....)))))).))))))((....)))))))).... ( -37.30, z-score =  -2.28, R)
>droSim1.chr2R 5626865 119 + 19596830
AAUGGAAUUAAUAGGCACUCCUUGGUAAAUGGGAACUCCGUUGAUCAACGGAAGCAUUACUCCUAAUGCCGGGGGCACUCCCAA-UUCUUCAACAAAGGGCUCCCUCCGGAGUUUCCCCA
..(((..(((..(((....)))...)))..((((((((((((((.....((((((((((....)))))).((((....))))..-)))))))))..(((....)))..)))))))))))) ( -37.00, z-score =  -0.93, R)
>consensus
AAAG_AAUUAAUAGGCACUCCUUGGUAAAUGGGAACUCCGUCGAUCAACGGAAGCAUUACUCCUAAUGUCGGGG_CACUCCCAA_UCCGGCAACGAAGUGCUCCCUCCGGAGUUUCCCCA
..............................((((((((((((....)))((..((((((....)))))).(((((((((.................))))))))).)))))))))))... (-28.12 = -29.30 +   1.19)

alignment

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secondary structure

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dotplot

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Window 2

Location 7,081,152 – 7,081,245
Length 93
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.56
Shannon entropy 0.40588
G+C content 0.51211
Mean single sequence MFE -41.10
Consensus MFE -30.26
Energy contribution -29.70
Covariance contribution -0.56
Combinations/Pair 1.31
Mean z-score -2.00
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.02
SVM RNA-class probability 0.979465
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 7081152 93 - 21146708
UGGGGAAACUCCGGAGGGAGCACUUCUCUGAUGGAUUUGGGAGUGCCCCCGACAUUAGGAGUAAUGCUUCCGUCGAUCGACGGAGUUUCCAGU---------------------------
...(((((((((...(((((((...((((((((...(((((......)))))))))).)))...)))))))(((....))))))))))))...--------------------------- ( -43.20, z-score =  -3.62, R)
>droEre2.scaffold_4845 3874804 118 + 22589142
UGGGGAAGCUCCGGGUGGAGCACUUCGUUGCCGGA-UUGGGAGUG-CCCCAACAUUACGAGUAAUGCUUCCGUCGAUCGACGGAGUUCCCAUUUAUCAAGGAGUGCCUAUUAAUAAUUAU
.((((...)))).(((((.(((((((.(((...((-.((((((..-......(((((....))))).(((((((....))))))))))))).))..)))))))))))))))......... ( -39.60, z-score =  -1.37, R)
>droYak2.chr2R 19076631 117 + 21139217
UGGGGAAACUCCGGUGGGAGCACUUCGUGGCCGGA-UUGGGAGUG--UCCGACAUUACGAGUAAUGCUUCCGUUGAUCGACGGAAUUCCCAUUUGCCAACGAGUGCCUAUUAAUUUCUUU
.(((....).))(((((..(((((.((((((..((-.(((((((.--...(.(((((....)))))).((((((....))))))))))))).))))).)))))))))))))......... ( -40.90, z-score =  -1.71, R)
>droSim1.chr2R 5626865 119 - 19596830
UGGGGAAACUCCGGAGGGAGCCCUUUGUUGAAGAA-UUGGGAGUGCCCCCGGCAUUAGGAGUAAUGCUUCCGUUGAUCAACGGAGUUCCCAUUUACCAAGGAGUGCCUAUUAAUUCCAUU
..(((((.(((((((((....)))))(((((....-..(((......)))(((((((....)))))))........)))))))))))))).........(((((........)))))... ( -40.70, z-score =  -1.30, R)
>consensus
UGGGGAAACUCCGGAGGGAGCACUUCGUUGACGGA_UUGGGAGUG_CCCCGACAUUACGAGUAAUGCUUCCGUCGAUCGACGGAGUUCCCAUUUACCAAGGAGUGCCUAUUAAUU_CUUU
..((((.(((((...(((((((.(((((........(((((......)))))....)))))...)))))))(((....)))))))))))).............................. (-30.26 = -29.70 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:47 2011