| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,078,213 – 7,078,311 |
| Length | 98 |
| Max. P | 0.500000 |
| Location | 7,078,213 – 7,078,311 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 87.40 |
| Shannon entropy | 0.21551 |
| G+C content | 0.36935 |
| Mean single sequence MFE | -22.85 |
| Consensus MFE | -18.98 |
| Energy contribution | -18.58 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 7078213 98 + 21146708 ------CAUUAUAGUUUUCAAUCGAAUCUCUAACAUCUACGAUAGGGAAUUAUUCCCGUAGAUAUAGGAAUGACCUUCACGGGGUCUACGGGUAUCAAUAAAGU ------....((((((..(.((((...............)))).)..)))))).(((((((((...((((.....))).)...)))))))))............ ( -23.66, z-score = -1.46, R) >droEre2.scaffold_4845 3871735 103 - 22589142 CACUAUACUCGUAGUUUUCAAUCGAAUCUAUAACAUCUACGAUAGAGAAAUAUUCCCGUAGGUAUGGGAAUGACCUUCA-GGGGUCUACGGGUAUCAAUAGGGU ....(((((((((((((((.((((...............)))).))))).(((((((((....)))))))))((((...-.))))))))))))))......... ( -29.26, z-score = -1.99, R) >droYak2.chr2R 19073602 103 - 21139217 CAUUAUAGUCCUAAUUUUCAAUCGAAUUUUUAACAUCUACGAUAGAGAAAUGUUCCCGUAGAUAUACGAAUGACCUUCA-GAGGUCUACGGGUAUCAAUAAAGU ..............(((((.((((...............)))).))))).((..(((((((((....(((.....))).-...)))))))))...))....... ( -21.06, z-score = -1.32, R) >droSec1.super_1 4647587 97 + 14215200 ------CAUUAUAGUUUUCAAUCGAAUCUAAAACAUCUACGAUAGGGAAAUAUUCCCGUAGAUAUAGGAAUGACCUUCA-GGGGUCUACGGGUAUCAAUAAAGU ------.......((((((.((((...............))))..))))))...(((((((((....(((.....))).-...)))))))))............ ( -20.46, z-score = -0.94, R) >droSim1.chr2R 5624031 97 + 19596830 ------CAUUAUAGUUUUCAAUCGAAUCUAAAACAUCUACGAUAGGGAAAUAUUCCCGUAGAUAUACGAAUGACCUUCA-GGGGUCUACGGGUAUCAAUAAAGU ------.....(((..(((....))).)))..............((((.....))))...((((..((...(((((...-.)))))..))..))))........ ( -19.80, z-score = -0.83, R) >consensus ______CAUUAUAGUUUUCAAUCGAAUCUAUAACAUCUACGAUAGGGAAAUAUUCCCGUAGAUAUAGGAAUGACCUUCA_GGGGUCUACGGGUAUCAAUAAAGU ..............(((((.((((...............)))).))))).....(((((((((....(((.....))).....)))))))))............ (-18.98 = -18.58 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:46 2011