| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,062,597 – 7,062,689 |
| Length | 92 |
| Max. P | 0.602840 |
| Location | 7,062,597 – 7,062,689 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 90.75 |
| Shannon entropy | 0.15992 |
| G+C content | 0.44578 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -21.42 |
| Energy contribution | -20.98 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602840 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7062597 92 - 21146708 AGAUUCUUUGAAGCUCUGAAGCAAGGACUUACUGUCUUGCCAUAUGGCAGCUGUGAAACUCGUCGUCCUUGAGCUGAAGCCCAAUUUUUUUA ............((((.(...(((((((((((.((..((((....)))))).))))........)))))))..).).)))............ ( -20.20, z-score = 0.31, R) >droEre2.scaffold_4845 3855813 90 + 22589142 AGAUUCUUU--UGCUUUGAGGCAAGGACUUACUGUCCUGCCAUAUGGCAGCUGUGAAACUCGACGUCCUUGAGCUCAAGCCUAAUGCUAUUA .........--.((((.(((.(((((((((((....(((((....)))))..))))........)))))))..)))))))............ ( -26.30, z-score = -1.67, R) >droYak2.chr2R 19057705 89 + 21139217 AGAUUC-UU--UGCUUGGAAUCAAGGACUUACUGUCCUGCCAUAUGGCAGCUGUGAGACUCGACGUCCUUGAGCUCAAGCCUAAUGCUAUUG ......-..--.((((((..((((((((.....((((((((....)))))......))).....))))))))..))))))............ ( -30.30, z-score = -3.11, R) >droSec1.super_1 4632046 90 - 14215200 AGAUUCUUU--UGCUUUGAAGCAAGGACUCACUGUCUUGCCAUAUGGCAGCUGUGAAACUCGACGUCCUUGAGCUCAAGUCUAAUUCUAUUA (((...((.--.((((.((..(((((((((((.((..((((....)))))).))))........)))))))...))))))..)).))).... ( -22.70, z-score = -1.08, R) >droSim1.chr2R 5605359 90 - 19596830 AGAUUCUUU--UGCUUUGAAGCAAGGACUCACUGUCUUGCCAUAUGGCAGCUGUGAAACUCGACGUCCUUGAGCUCAAGCCUAAUUCUAUUG (((...((.--.((((.((..(((((((((((.((..((((....)))))).))))........)))))))...))))))..)).))).... ( -24.00, z-score = -1.46, R) >consensus AGAUUCUUU__UGCUUUGAAGCAAGGACUUACUGUCUUGCCAUAUGGCAGCUGUGAAACUCGACGUCCUUGAGCUCAAGCCUAAUUCUAUUA ............((((.....(((((((((((....(((((....)))))..))))........))))))).....))))............ (-21.42 = -20.98 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:42 2011