| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,059,606 – 7,059,697 |
| Length | 91 |
| Max. P | 0.646385 |
| Location | 7,059,606 – 7,059,697 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 67.49 |
| Shannon entropy | 0.62454 |
| G+C content | 0.43650 |
| Mean single sequence MFE | -19.08 |
| Consensus MFE | -9.61 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.23 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7059606 91 - 21146708 AGAGCGCGUGAAAGGAUCACAGUGCGGAUCAAACAGACCGGUCUG-UUGAAAAGUCAG--GGAAAUCCAGUUGAAAAACGAAAGUAACAAAAUU ...((((((((.....)))).))))...((((.((((....))))-))))....(((.--((....))...)))...((....))......... ( -20.90, z-score = -1.55, R) >droSim1.chr2R 5602396 88 - 19596830 AGAGCGCGUGAAAGGAUCACAGUGCGGAUCAAACAGACCGGUCUG--UGAAAAGUCAG--GAAAACCCAGUUGAAAAACUAUAGAAAUAAUU-- ...((((((((.....)))).)))).(((...(((((....))))--).....))).(--(.....))((((....))))............-- ( -19.90, z-score = -1.81, R) >droSec1.super_1 4629121 90 - 14215200 AGAGCGCGUGAAAGGAUCACAGUGCGGAUCAAACAGACCGGUCUG--UGAAAAGUCAG--GGAAAGCCAGUGAAAAAACUAUAGUAACAAAAUU .(.((.(.(((.....((((((..(((.((.....)))))..)))--)))....))).--)....)))(((......))).............. ( -17.90, z-score = -0.86, R) >droYak2.chr2R 19054488 86 + 21139217 GGAGCGCGUGAAAGGAUCACAGUGCGGAUCGAACAGACCGGUUUG--UGAAGAGUUAA--UGAAACCCGGUUGAAAAA----AGCUACAAAAGU ...((((((((.....)))).))))((........((((((((..--(.........)--..))..))))))......----..))........ ( -17.89, z-score = -0.28, R) >droEre2.scaffold_4845 3848802 90 + 22589142 AGAGCGCGUGAAAGGAUCACAGUGCGGAUCAAACGGACCGGUCUG--UGAAAAGUUCA--UGAAACGCGCUUGGGAAAUAUAGGCAAAAGAACC ...(((((((((....((((((..(((.((.....)))))..)))--)))....))))--))...)))(((((.......)))))......... ( -26.30, z-score = -2.24, R) >dp4.chr3 1070448 94 + 19779522 AGAGCACGCGAGAGGAUCGCAUCGCGCACCGAAAGUGACGGUUAAUUUCACGCAACAAUUUUGAAACAUUUCGAAUAAGCAAAACAAAAAACUA ...((..(((.((((((((..((((.........)))))))))...))).)))......((((((....))))))...)).............. ( -16.10, z-score = 0.22, R) >droPer1.super_34 261337 94 + 916997 AGAGCACGCGAGAGGAUCGCAUCGCGCACCGAAAGUGACGGUUAAUUUCACGCAACAAUUUUGAAACAUUUCGAAUAAAUAAAACGAAAAACUA ...((..((((.....))))(((((((.......))).)))).........))......((((((....))))))................... ( -14.60, z-score = 0.80, R) >consensus AGAGCGCGUGAAAGGAUCACAGUGCGGAUCAAACAGACCGGUCUG__UGAAAAGUCAA__UGAAACCCAGUUGAAAAACUAAAGCAAAAAAAUU ...((((((((.....)))).))))(((((.........))))).................................................. ( -9.61 = -10.06 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:40 2011