| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,044,679 – 7,044,781 |
| Length | 102 |
| Max. P | 0.954963 |
| Location | 7,044,679 – 7,044,781 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.58 |
| Shannon entropy | 0.27149 |
| G+C content | 0.36928 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -12.67 |
| Energy contribution | -12.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7044679 102 - 21146708 CCCACAAACUAAAACCGCUUUUACCCCCUUUGAGCCUUUAAAGC-CACAACUAAUCCCUUCUUGGGAUAAUUAAUUAUUGCACCUAUUUGUAAGCGCUUUAAU ................((((...........))))..(((((((-(.......(((((.....))))).........(((((......)))))).))))))). ( -17.60, z-score = -2.75, R) >droYak2.chr2R 19039460 102 + 21139217 -CCACAAGCUAAAAUCGCUUUUAACCCCUUCGAUUCCCUGAAAUGCAAAAUUAAUCCCUUUCUGGGAUAAUUAAUUAUUGCAUCUACUUGUAAGCGCUUUAAU -..........(((.(((((.(((....((((......))))((((((((((((((((.....)))))...))))).))))))....))).))))).)))... ( -19.00, z-score = -2.83, R) >droEre2.scaffold_4845 3834680 102 + 22589142 GCCAGCAGUUCAAUUCGCUCUU-ACCCCUUUGAACUUCUGAAAUGAAAAACGAAUCCCUUUCUGGGAUAAUUAAUUAUUGCAUCUACUUGUAAGCGCUUUAAU (((((.(((((((.........-......))))))).))).............(((((.....))))).........(((((......)))))))........ ( -20.16, z-score = -2.22, R) >consensus _CCACAAGCUAAAAUCGCUUUUAACCCCUUUGAACCUCUGAAAUGCAAAACUAAUCCCUUUCUGGGAUAAUUAAUUAUUGCAUCUACUUGUAAGCGCUUUAAU ...............(((...................................(((((.....))))).........(((((......))))))))....... (-12.67 = -12.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:39 2011