| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,044,018 – 7,044,126 |
| Length | 108 |
| Max. P | 0.527163 |
| Location | 7,044,018 – 7,044,126 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Shannon entropy | 0.43900 |
| G+C content | 0.49944 |
| Mean single sequence MFE | -32.25 |
| Consensus MFE | -15.61 |
| Energy contribution | -18.25 |
| Covariance contribution | 2.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7044018 108 - 21146708 GCCAGCGGAUCGAUGGUGGGGCCUA--UCGCCAGAUAACAAUAUUGCAUCUCGUUUAAGUGCUCCACCAAGAACAGAAGCAUUUUUUUCC-----ACGAAUCGAGGGCUGAGCAA ((((((...(((((((((((((((.--..((.((((...........)))).))...)).)))))))).......((((......)))).-----....)))))..)))).)).. ( -32.70, z-score = -1.45, R) >droAna3.scaffold_13266 763162 97 - 19884421 --CGCCAUAUCCAUACUGAA-------UCGC--GAUAGCACUAUUGCAUCC--UUCGAG-----CUUCGAGUACACUUGCUUUUUUCUAGACCUCCGCCUCCAAGUGCUAAGCAC --..................-------..((--..(((((((...((....--.((.((-----....(((((....)))))....)).)).....)).....))))))).)).. ( -14.90, z-score = 0.37, R) >droEre2.scaffold_4845 3834091 110 + 22589142 GCCCGCGGAUCGAUGGUGGGGCCUAUCUCGCUAGAUAACAAUAUUGCAUCUCAUUUAAGUGCUCCACCGAGAACAGAAGCAUUUUUUUCA-----CCGAUUCGAGGGCUGAGCAA ((((.(((((((..((((((((((((((....))))).((....))............).))))))))(((((.(((....)))))))).-----.))))))).))))....... ( -35.40, z-score = -1.93, R) >droYak2.chr2R 19038808 113 + 21139217 GCCCGCGGAUCGAUGGUGGGGCCUA--UCGCCAGAUAACAAUAUUGCAUCUCGCCCAAGUGCUCCACCAAGAACAGAAGCAUUUUUCCCCGAAUCGAGAAUCGAGGGCUGAGCAA ((((.(((.(((((((((((((((.--..((.((((...........)))).))...)).)))))))).......((((....)))).....)))))...))).))))....... ( -36.00, z-score = -1.21, R) >droSec1.super_1 4613262 107 - 14215200 GCCAGCGGAUCGAUGGUGGGGCCUA--UCGCCAGAUAACAAUAUUGCAACUCGUUUAAGUGCUCCACCAAGAACGGAAGCAUUUUUUCCA------CGAAUCGAGAGCUGAGCAA ((((((...(((((((((((((.((--((....))))...........(((......)))))))))))......(((((.....))))).------...)))))..)))).)).. ( -36.60, z-score = -2.85, R) >droSim1.chr2R 5585287 107 - 19596830 GCCAGCGGAUCGAUGGUGGGGCCUA--UCGCCAGAUAACAAUAUUGCAUCUCGUUUAAGUGCUCCACCAAGAACGGAAGCAUUUUUUCCA------CGAAUCGAGAGCUGAGCAA ((((((...(((((((((((((((.--..((.((((...........)))).))...)).))))))))......(((((.....))))).------...)))))..)))).)).. ( -37.90, z-score = -3.05, R) >consensus GCCAGCGGAUCGAUGGUGGGGCCUA__UCGCCAGAUAACAAUAUUGCAUCUCGUUUAAGUGCUCCACCAAGAACAGAAGCAUUUUUUCCA______CGAAUCGAGGGCUGAGCAA ((((((...(((((((((((((.......((.((((...........)))).))......)))))))))....(....).....................))))..)))).)).. (-15.61 = -18.25 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:38 2011