| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,043,744 – 7,043,848 |
| Length | 104 |
| Max. P | 0.597915 |
| Location | 7,043,744 – 7,043,848 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.42 |
| Shannon entropy | 0.33754 |
| G+C content | 0.43402 |
| Mean single sequence MFE | -33.77 |
| Consensus MFE | -14.27 |
| Energy contribution | -15.05 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7043744 104 + 21146708 AAGUUUUGCCGCAUUUUUGG--UGGCAGCUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGACUUA----------UCGUGUUGCAGAAG ...((((((.((((....((--(.((.((((.(((((((.(((..(((((.......)))))..))).))).)))).))))...)).)))..----------..)))).)))))). ( -34.50, z-score = -2.68, R) >droAna3.scaffold_13266 762898 116 + 19884421 AAACUUUGCGGCUUCUGGGGGGCGACAGAUGUGGAGAUCAACUAAAGUUGUAGAACUCAUCUGGAAGUCCCUUCCUCUCCCCAAACUACACACAAAUAUUCUUCGUUUUGCGGAAG ....((((.((.....(((((((..((((((.(.....((((....)))).....).))))))...))))))).....)).))))................((((.....)))).. ( -29.60, z-score = -0.36, R) >droEre2.scaffold_4845 3833826 104 - 22589142 AAGUUUUGCCGCAUUUUUGG--CGGCAGAUGCAGAGCUUAACUAAAGUUGUGUAACUAAACUAAAGCAAAGUCACUUUAGCCCAGCGACUUA----------UCGUGUUGCAGAAG .(((((((((((.......)--)))))))((((.(((((.....))))).)))))))...((((((........))))))....(((((...----------....)))))..... ( -30.00, z-score = -1.48, R) >droYak2.chr2R 19038538 103 - 21139217 -AAGUUUGCCGCAUUUUUGG--UGGCAGAUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCUGCGACUUA----------UCGUGUUGCAGAAG -..(((((((((.......)--))))))))(((((((((.(((..(((((.......)))))..))).))).))))...)).(((((((...----------....)))))))... ( -34.40, z-score = -3.29, R) >droSec1.super_1 4612998 104 + 14215200 AAGUUUUGCCGCAUUUUUGG--UGGCAGCUGAAGAGCUUAACUAAAGUUGUGUACCUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGACUUA----------UCGUGUUGCUGAAG ......((((((.......)--)))))((((((((((((.(((..(((((.......)))))..))).))).))))))))).(((((((...----------....)))))))... ( -39.60, z-score = -4.71, R) >droSim1.chr2R 5585023 104 + 19596830 AAGUUUUGCCGCAUUUUUGG--UGGCAGCUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGACUUA----------UCGUGUUGCAGAAG ...((((((.((((....((--(.((.((((.(((((((.(((..(((((.......)))))..))).))).)))).))))...)).)))..----------..)))).)))))). ( -34.50, z-score = -2.68, R) >consensus AAGUUUUGCCGCAUUUUUGG__UGGCAGAUGCAGAGCUUAACUAAAGUUGUGUAACUCAACUAAAGUAAAGUCUCUUUAGCCCGGCGACUUA__________UCGUGUUGCAGAAG ....(((((.((((............((.((((.(((((.....))))).)))).))...((((((........))))))........................)))).))))).. (-14.27 = -15.05 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:38 2011