| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,040,997 – 7,041,095 |
| Length | 98 |
| Max. P | 0.677751 |
| Location | 7,040,997 – 7,041,095 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.46 |
| Shannon entropy | 0.48901 |
| G+C content | 0.44857 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -13.85 |
| Energy contribution | -12.63 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.677751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7040997 98 + 21146708 UUCCUUUUGGCCAAACACGGGUUUAUCAGAAU--ACAUGUGUAUCUAAAUACGCUCCUUGUGGCAAUCUUGUUGGAAGGACACGUGUUCUCUUUAACAUU ..((....))((......))(((....(((((--((..((((((....))))))(((((.(((((....))))).)))))...)))))))....)))... ( -23.30, z-score = -1.43, R) >droAna3.scaffold_13266 760832 91 + 19884421 -UUCCUCGGUCCUGGCACUGGUCCUUCC-------CUUCUUUGGCGCAGGAGAGCCUUUCUGACGCGAUUGUCAAUGCGGCACGUGUCUGCAUUAGCAU- -....((((((..(((.(...((((.((-------(......)).).))))).))).....))).))).((..((((((((....).)))))))..)).- ( -25.00, z-score = 0.79, R) >droEre2.scaffold_4845 3831566 96 - 22589142 -GUCCUACGGCCAGACACGGAUUUAUCAGAAG--ACAUGUGUAUCUAAAUACGUUCCGU-UGGCAAUCUGGUCGGAAGGACACGUGUUCUCCUUAACAUU -(((((.((((((((((((((....((....)--).((((((......)))))))))).-))....))))))))..)))))..(((((......))))). ( -28.50, z-score = -1.96, R) >droYak2.chr2R 19036218 96 - 21139217 -UUCCUCCGGCCAGACACGGAUUUAUCAGAGC--ACAUGUGUAUCUAGAAACGUUCCUU-UGACAGUCUUGUCGAAAGGACACGUGUGCUCCUUAACAUU -....((((........)))).......((((--(((((((.............(((((-((((......))).)))))))))))))))))......... ( -30.71, z-score = -3.13, R) >droSec1.super_1 4610470 98 + 14215200 -UUCCUACGGCCAAACACGGAUUUAUCAGAAUAUACAUGUGUAUCUAAAUACGAUCCUU-UGGCAAUCUUGUUGGCAGGACACGUGUUCUCCUUAACAUU -........((((((...((((((((.(((.((((....)))))))..))).)))))))-)))).....((((((.(((((....)))))))..)))).. ( -20.90, z-score = -1.13, R) >droSim1.chr2R 5580327 98 + 19596830 -UUCCUACGGCCAAGCACGGAUUUAUCAGAAUAUACAUGUGUAUCUAAAUACGCUCCUU-UGGCAAUCUUGUUGGCAGGACACGUGUUCUCCUUAACAUU -.......((...((((((...................((((((....))))))(((((-..(((....)))..).))))..))))))..))........ ( -20.70, z-score = -0.71, R) >consensus _UUCCUACGGCCAAACACGGAUUUAUCAGAAU__ACAUGUGUAUCUAAAUACGCUCCUU_UGGCAAUCUUGUCGGAAGGACACGUGUUCUCCUUAACAUU ........((...((((((..................(((((......))))).((((..((((......))))..))))..))))))..))........ (-13.85 = -12.63 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:37 2011