| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,032,155 – 7,032,235 |
| Length | 80 |
| Max. P | 0.766596 |
| Location | 7,032,155 – 7,032,235 |
|---|---|
| Length | 80 |
| Sequences | 3 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 90.42 |
| Shannon entropy | 0.13460 |
| G+C content | 0.56531 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -25.98 |
| Energy contribution | -25.43 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.766596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7032155 80 - 21146708 UGUUAGUCCUUUGCGGGAACUUGGGCGUAUCCUUUGUGGGUGCGCCACCUGUUCAGACAUGUUGCUCAAGGCCACGCGCU ............(((.((((...(((((((((.....)))))))))....))))......((.((.....)).)).))). ( -27.80, z-score = -0.64, R) >droSim1.chr2R 5571477 80 - 19596830 UUUUCGUCCUUUGCGUGGGCUUGGGCGUAUCCUUUGUGGGUGCGCCACCUGUUCAGACAAGUUGCUCAAGGCCACGCGCU ............((((((.(((((((((((((.....)))))))))((.(((....))).))....)))).))))))... ( -36.20, z-score = -3.31, R) >droYak2.chr2R 19027438 77 + 21139217 ---UCGUCCUUUGUGGGAGCUUGGGCGUAUCCUUUGUGGGUGCGCCACCUGUUCAGACAUGUUGCUCAAGGCCACGAACU ---......(((((((((((...(((((((((.....)))))))))((.(((....))).)).))))....))))))).. ( -29.30, z-score = -1.69, R) >consensus U_UUCGUCCUUUGCGGGAGCUUGGGCGUAUCCUUUGUGGGUGCGCCACCUGUUCAGACAUGUUGCUCAAGGCCACGCGCU ............(((.((((...(((((((((.....)))))))))....))))......((.((.....)).)).))). (-25.98 = -25.43 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:36 2011