| Sequence ID | dm3.chr2R |
|---|---|
| Location | 7,018,704 – 7,018,806 |
| Length | 102 |
| Max. P | 0.992828 |
| Location | 7,018,704 – 7,018,806 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 69.05 |
| Shannon entropy | 0.58239 |
| G+C content | 0.39494 |
| Mean single sequence MFE | -19.85 |
| Consensus MFE | -11.78 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.57 |
| SVM RNA-class probability | 0.992828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 7018704 102 - 21146708 -------CGAAGAGUGGCUUUUAACCGGAACUCACUGGCAGAAGCCGCCUCUAUCUGCCCCAUAAAUAAUCAUUUAUUGAAUGAACCAAAAAUACAUAUAUACAUAUUC -------.((((((((((((((..((((......)))).)))))))).)))).))..............((((((...))))))......................... ( -20.90, z-score = -2.35, R) >droSim1.chr2R 5557530 94 - 19596830 -------CGAAGAGUGGCUUUUAACCGGAACUCACUGGCAGAAGCCGCCUCUAUCUGCCCCAUAAAUAAUCAUUUAUUGAAUGAACCAAAAAUACAUAUUC-------- -------.((((((((((((((..((((......)))).)))))))).)))).))..............((((((...)))))).................-------- ( -20.90, z-score = -2.54, R) >droSec1.super_1 4582848 86 - 14215200 --------CGAGAGUGGCUUUUAA-------CCACUGGCAGAAGCCGCCUCUAUCUGCCCCAUAAAUAAUCAUUUAUUGAAUGAACCAAAAAUACAUAUUC-------- --------.(((.(((((((((..-------(....)..))))))))))))..................((((((...)))))).................-------- ( -18.30, z-score = -2.47, R) >droYak2.chr2R 19012992 101 + 21139217 -------AGAAGAGUGGCUUUUAACCGGAACCCACUGGCAGAAGCCGCCUCUAUCUGCCCCAUAAAUAAUCAUUUAUUGAAUGAACCAAAAAUACAUAUUCACUAGCA- -------(((((((((((((((..((((......)))).)))))))).)))).))).............((((((...))))))........................- ( -21.70, z-score = -2.21, R) >droEre2.scaffold_4845 3809987 94 + 22589142 -------UGAAGUGUGGCUUUUAACCGGAACUCACUGGCAGAAGCCGCCUUCAUCUGGCCCAUAAAUAAUCAUUUACUGAAUGAACCAAAAAUAUAUAUUC-------- -------(((((.(((((((((..((((......)))).))))))))))))))................((((((...)))))).................-------- ( -24.20, z-score = -3.01, R) >droAna3.scaffold_13266 736223 101 - 19884421 CAUGGGCAGGGGGGUGACUUUUAACCGGAAUUCACUGGCAGAAGCCGCUUCCA--AGCUCCAUAAAUUAUCAUUUAUUGAAUGAGCCUCAGAUACACAUAUUC------ .((((((..(((((((.(((((..((((......)))).))))).))))))).--.)).))))......((((((...))))))...................------ ( -27.00, z-score = -1.48, R) >droGri2.scaffold_15245 6438496 80 - 18325388 ----------AGACUCUUUUUU--------UUUCUUCAAAUAAAUGAGAUCAACCCACCAACUUAAUU-UAACUAAUACAAUGGGCCAGUGGCACACAA---------- ----------.(((((.(((.(--------((.....))).))).))).))...((((...((((...-............))))...)))).......---------- ( -5.96, z-score = 1.13, R) >consensus ________GAAGAGUGGCUUUUAACCGGAACUCACUGGCAGAAGCCGCCUCUAUCUGCCCCAUAAAUAAUCAUUUAUUGAAUGAACCAAAAAUACAUAUUC________ ..........((((((((((((..((((......)))).))))))))).))).................(((((.....)))))......................... (-11.78 = -12.70 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:34 2011