| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,990,017 – 6,990,134 |
| Length | 117 |
| Max. P | 0.692944 |
| Location | 6,990,017 – 6,990,134 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.75 |
| Shannon entropy | 0.20423 |
| G+C content | 0.43512 |
| Mean single sequence MFE | -23.81 |
| Consensus MFE | -16.58 |
| Energy contribution | -16.62 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6990017 117 - 21146708 GCUUUCUUAGCGCUUAAAAUUCCGUUUCGAAAAUGGAAAACAAAACAAAAACAAACUGCUCAAGACU---GUGGCUCCAAUCGCGACUCCAAACUCACAUCCAAAUCAACUUGAGCGCUG (((.....)))((......(((((((.....)))))))...................(((((((...---((((......))))((........)).............))))))))).. ( -22.30, z-score = -2.04, R) >droAna3.scaffold_13266 709476 116 - 19884421 GCUUUCUUAGCGUUUAAAAUUCCGUUUCGAAAAUGGAAAACAAAACAAAAACAAAACGCUCCACUCC----GGGCUUCGACUUCAAACUCCAACUCGCAGCCAAAUCAACUUGAGCAGUG (((.....)))((((....(((((((.....)))))))....))))...........((((......----.((((.(((.((........)).))).))))..........)))).... ( -22.33, z-score = -1.67, R) >droYak2.chr2R 18986198 120 + 21139217 GCUUUCUUAGCGCUUAAAAUUCCGUUUCGAAAAUGGAAAACAAAACAAAAACAAACUGCUCGAGACUCCGCCGACUCCAAUCGCGACUCCAAACUCACAUCCAAAUCAACUUGAGCGCUG .......((((((((((..(((((((.....))))))).......................(((....(((.((......))))).))).....................)))))))))) ( -22.50, z-score = -2.38, R) >droSec1.super_1 4556929 117 - 14215200 GCUUUCUUAGCGCUUAAAAUUCCGUUUCGAAAAUGGAAAGCAAAACAAAAACAAACUGCUCGAGACC---GUGGCUCCAAACGCGACUCCAAACUCACAUCCAAAUCAACUUGAGCGCUG .......((((((((((..(((((((.....)))))))((((..............)))).(((..(---(((........)))).))).....................)))))))))) ( -25.94, z-score = -2.24, R) >droSim1.chr2R 5530849 116 - 19596830 GCUUUCUUAGCGCUUAAAAUUCCGUUUCGAAAAUGGAAA-CAAAACAAAAACAAACGGCUCGAGACC---GUGGCUCCAAACGCGACUCCAAACUCACAUCCAAAUCAACUUGAGCGCUG .......((((((((((......(((((((...((....-)).........(....)..)))))))(---(((........)))).........................)))))))))) ( -26.00, z-score = -2.37, R) >consensus GCUUUCUUAGCGCUUAAAAUUCCGUUUCGAAAAUGGAAAACAAAACAAAAACAAACUGCUCGAGACC___GUGGCUCCAAACGCGACUCCAAACUCACAUCCAAAUCAACUUGAGCGCUG .......((((((((((..(((((((.....)))))))................................(((........)))..........................)))))))))) (-16.58 = -16.62 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:33 2011