| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,988,161 – 6,988,227 |
| Length | 66 |
| Max. P | 0.995158 |
| Location | 6,988,161 – 6,988,227 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 78.61 |
| Shannon entropy | 0.35076 |
| G+C content | 0.44744 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -15.38 |
| Energy contribution | -16.02 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.983781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6988161 66 + 21146708 CUUCCUGCCACAAAUACAUACAAAUAAUUAC----GUGUAUGUGUGUGUGUGUGUACGUUCAUGUGACGG .....(((((((.(((((((((.........----.)))))))))...)))).)))((((.....)))). ( -16.90, z-score = -0.68, R) >droSim1.chr2R 5528975 62 + 19596830 CUUCCUGCCACAAAUACAUACAAAUAAUUAC--------GUGUAUGUGUGUGUGCUUGUACGUGUGGCGG ....((((((((.(((((((((.........--------.)))))))))..(((....))).)))))))) ( -21.30, z-score = -2.67, R) >droSec1.super_1 4555091 62 + 14215200 CUUCCUGCCACAAAUACAUACAAAUAAUUAC--------GUGUAUGUGUGUGUGCUUGUAUGUGUGGCGG ....((((((((.(((((((((.(((.....--------.))).))))))))).........)))))))) ( -21.20, z-score = -2.86, R) >droYak2.chr2R 18984286 70 - 21139217 UCUCCUGCCACAAACACAUACAAAUAAUUAUGCGAGUGUCUGUGUGACUGUUUGUACGUGCAUGUGGCGG ....((((((((..(((.((((((((.(((((((......))))))).)))))))).)))..)))))))) ( -28.70, z-score = -4.35, R) >droEre2.scaffold_4845 3779900 62 - 22589142 CCUCCUGCCACCAAUACGUGCAAGUAAUUAU--------CUGUGUGUGUGUGUGUACGUGCAUGUGGCGG ....(((((((...((((((((..((..(((--------....)))..))..))))))))...))))))) ( -20.20, z-score = -1.53, R) >consensus CUUCCUGCCACAAAUACAUACAAAUAAUUAC________CUGUGUGUGUGUGUGUACGUACAUGUGGCGG ....((((((((..((((((((.(((..(((..........)))....))).))))))))..)))))))) (-15.38 = -16.02 + 0.64)
| Location | 6,988,161 – 6,988,227 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 78.61 |
| Shannon entropy | 0.35076 |
| G+C content | 0.44744 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -17.33 |
| Energy contribution | -17.49 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.77 |
| SVM RNA-class probability | 0.995158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6988161 66 - 21146708 CCGUCACAUGAACGUACACACACACACACAUACAC----GUAAUUAUUUGUAUGUAUUUGUGGCAGGAAG ((((((((...(((((((.......((........----)).......)))))))...)))))).))... ( -15.14, z-score = -1.27, R) >droSim1.chr2R 5528975 62 - 19596830 CCGCCACACGUACAAGCACACACACAUACAC--------GUAAUUAUUUGUAUGUAUUUGUGGCAGGAAG ((((((((.(((((.(((.....((......--------)).......))).))))).)))))).))... ( -17.50, z-score = -2.80, R) >droSec1.super_1 4555091 62 - 14215200 CCGCCACACAUACAAGCACACACACAUACAC--------GUAAUUAUUUGUAUGUAUUUGUGGCAGGAAG ((((((((.(((((.(((.....((......--------)).......))).))))).)))))).))... ( -17.20, z-score = -3.30, R) >droYak2.chr2R 18984286 70 + 21139217 CCGCCACAUGCACGUACAAACAGUCACACAGACACUCGCAUAAUUAUUUGUAUGUGUUUGUGGCAGGAGA ((((((((.(((((((((((.(((......(.....).....))).))))))))))).)))))).))... ( -25.50, z-score = -3.78, R) >droEre2.scaffold_4845 3779900 62 + 22589142 CCGCCACAUGCACGUACACACACACACACAG--------AUAAUUACUUGCACGUAUUGGUGGCAGGAGG (((((((....((((.((.............--------.........)).))))....))))).))... ( -12.75, z-score = -0.51, R) >consensus CCGCCACAUGCACGUACACACACACACACAC________GUAAUUAUUUGUAUGUAUUUGUGGCAGGAAG ((((((((.(((((((((..............................))))))))).)))))).))... (-17.33 = -17.49 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:32 2011