| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,531,447 – 2,531,552 |
| Length | 105 |
| Max. P | 0.981381 |
| Location | 2,531,447 – 2,531,552 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 86.25 |
| Shannon entropy | 0.25465 |
| G+C content | 0.42744 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -24.09 |
| Energy contribution | -23.98 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.07 |
| SVM RNA-class probability | 0.981381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2531447 105 - 23011544 ----AUAUAUUUGCUAGACAUUUGGCAGCUGCAGUCGUCGUAAGUCGAAAGCGGCACGAAGCUCG-AUUAAAGCCACAAGGCAGCAGAG-UCCCAGAAAAUAACGAAAAAA ----.....((((((.(.....((((.(((((..(((.(....).)))..))))).((.....))-......)))).....))))))).-..................... ( -28.40, z-score = -2.01, R) >droSim1.chrU 3851519 102 + 15797150 ----AUAUAUUUGCUAGACAUUUGGCAGCUGCAGUCGUCGUAAGUCGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG-UCCCAGAAAAUAUCAAA---- ----.....((((((.(.....((((.(((((..(((.(....).)))..))))).((.....)).......)))).....))))))).-.................---- ( -29.00, z-score = -3.31, R) >droSec1.super_5 705302 106 - 5866729 ----AUAUAUUUGCUAGACAUUUGGCAGCUGCAGUCGUCGUAAGUCGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG-UCCCAGAAAAUAACGAAAAAA ----.....((((((.(.....((((.(((((..(((.(....).)))..))))).((.....)).......)))).....))))))).-..................... ( -29.00, z-score = -3.08, R) >droYak2.chr2L 2523903 106 - 22324452 ----AUAUAUUUGCUAGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG-UCACAAAAAAUAACGAAAAAC ----.....((((((.(.....((((.(((((..(((.(....).)))..))))).((.....)).......)))).....))))))).-..................... ( -26.20, z-score = -2.30, R) >droEre2.scaffold_4929 2577297 106 - 26641161 ----AUAUAUUUGCUAGACAUUUGGCAGCUGCAGUCGUCGUAAGUUGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG-UCACCGAAAAUAACGAAAAAA ----.....((((((.(.....((((.(((((..(((.(....).)))..))))).((.....)).......)))).....))))))).-..................... ( -26.20, z-score = -1.78, R) >droAna3.scaffold_12913 297755 109 + 441482 AUAUAUGUACUUGGAAGACAUUUGGCAGCUGCAAUUGUCGCAAGUUGGAGGCA-CACCGAGCACGAAUAAAAGCCACAAGGCAGCGAAGAGUACCAAAAAAAAUAGGAAC- ......((((((....((((....((....))...))))((..(((.(.(...-..)).)))..........(((....))).))...))))))................- ( -21.90, z-score = -0.34, R) >consensus ____AUAUAUUUGCUAGACAUUUGGCAGCUGCAGUCGUCGUAAGUCGAAAGCAGCACGAAGCUCGAAUAAAAGCCACAAGGCAGCAAAG_UCACAGAAAAUAACGAAAAAA .........((((((....(((((((.(((((..(((.(....).)))..))))).....)).)))))....(((....)))))))))....................... (-24.09 = -23.98 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:38 2011