| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,981,423 – 6,981,520 |
| Length | 97 |
| Max. P | 0.705981 |
| Location | 6,981,423 – 6,981,520 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 77.20 |
| Shannon entropy | 0.36458 |
| G+C content | 0.43322 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -11.81 |
| Energy contribution | -11.49 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6981423 97 - 21146708 CGAGUGCUGCCAUUUCUUUGCGAGUG-GCAAUAGUGGCAAUAGAAAGGUGGGCAGGGAGCGUAAAAAUCAUUAAAAAUGGUC-AGGCAUGUAAUGGUUC ((..(.(((((.(((((((((.(.((-....)).).)))).)))))....))))).)..))....((((((((...(((...-...))).)))))))). ( -27.50, z-score = -2.46, R) >droEre2.scaffold_4845 3773312 94 + 22589142 CGAAAGGUGUC-UUCUGCAGUGGGUAUACGAGUGUACUCGUAGAAUGGAGGGCAUUAA----AAAAAUCAUUAAAAAUGGUCAAGGCAUGUAAUGGUUC .....((((((-((((.(..((((((((....))))))))..)...))))))))))..----...((((((((...(((.......))).)))))))). ( -25.50, z-score = -4.10, R) >droSec1.super_1 4548364 88 - 14215200 CGAGUGCAGCCAUUUCUUAGCGAGU----------GGCAAUAGAAAGGAGGGCAGAAAGCGUAAAAAUCAUUAAAAAUGGUC-AGGCAUGUAAUGGUUC ....(((.(((((((......))))----------))).............((.....)))))..((((((((...(((...-...))).)))))))). ( -17.50, z-score = -0.83, R) >droSim1.chr2R 5522212 88 - 19596830 CGAGUGCAGCCAUUUCUUAGCGAGU----------GGCAAUAGAAAGGAGGGCAGAGAGCGUAAAAAUCAUUAAAAAUGGUC-AGGCAUGUAAUGGUUC ....(((.(((((((......))))----------))).............((.....)))))..((((((((...(((...-...))).)))))))). ( -17.50, z-score = -0.66, R) >consensus CGAGUGCAGCCAUUUCUUAGCGAGU__________GGCAAUAGAAAGGAGGGCAGAAAGCGUAAAAAUCAUUAAAAAUGGUC_AGGCAUGUAAUGGUUC ......(((((.((((((..........................)))))))))))..........((((((((...(((.......))).)))))))). (-11.81 = -11.49 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:30 2011