| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,980,930 – 6,981,039 |
| Length | 109 |
| Max. P | 0.589822 |
| Location | 6,980,930 – 6,981,039 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.09 |
| Shannon entropy | 0.27832 |
| G+C content | 0.44934 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -21.31 |
| Energy contribution | -22.14 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6980930 109 + 21146708 -----UAGGAAAAUGGCGAGGAAACCGAGGAAACAGCCGACAACCGGCAACUCAAUUAUGCGCAAUUUAGACGAGUCCUUGCCAAUCUAAUUGCAGGCAUUGCAUUUUGCAAAA------ -----..(((...(((((((((...((.(....).((((.....)))).......................))..))))))))).)))..(((((((........)))))))..------ ( -31.10, z-score = -2.18, R) >droAna3.scaffold_13266 700105 117 + 19884421 CCAGAACAGCAGACUGCCAGACUGCCAGACCGACAGCCGGCAACCGGCAACUCAAUUAUGCGCAAUUUAGACGAGUCCUUACAAAUCUAAUUGUAGGCAUUGCAU--UGCAAAAAAAUA- ........((((..(((.....((((.(((((...(((((...)))))..((.((((......)))).)).)).)))..(((((......)))))))))..))))--))).........- ( -26.20, z-score = -0.98, R) >droEre2.scaffold_4845 3772861 114 - 22589142 ----GUAGGAAAAUGGCUAGGAAACCGAGGAAACAGCCGACAACCGGCAACUCAAUUAUGCGCAAUUUACAAGAGUCCUUGCCAAUCUAAUUGUAGGCAUUGCAU--UGCAAAAAAAGCU ----((((...((((.((((....)((((((....((((.....))))..(((...................)))))))))............))).))))...)--))).......... ( -24.81, z-score = -0.13, R) >droYak2.chr2R 18977056 107 - 21139217 ----CGGGGAAAAUGGCAAGGAAACCGAGGAAACAGCCGACAACCGGCAACUCAAUUAUGCGCAAUUUAGACGAGUCCUUGCCAAUCUAAUUGUAGGCAUUGCAU--UGCAAA------- ----...(((...(((((((((...((.(....).((((.....)))).......................))..))))))))).)))..((((((((...)).)--))))).------- ( -30.40, z-score = -1.73, R) >droSec1.super_1 4547926 107 + 14215200 -----UAGGAAAAUGGCGAGGAAACCGAGGAAACAGCCGACAACCGGCAACUCAAUUAUGCGCAAUUUAGACGAGUCCUUGCCAAUCUAAUUGUAGGCAUUGCAU--UGCAAAA------ -----..(((...(((((((((...((.(....).((((.....)))).......................))..))))))))).)))..((((((((...)).)--)))))..------ ( -30.00, z-score = -2.15, R) >droSim1.chr2R 5521772 107 + 19596830 -----UAGGAAAAUGGCGAGGAAACCGACGAAACUGCCGACAACCGGCAACUCUUUUAUGCGCAAUUUAGACGAUUCCUUGCCAAUCUAAUUGUAGGCAUUGCAU--UGCAAAA------ -----..(((...((((((((((..((.......(((((.....)))))..(((...((.....))..))))).)))))))))).)))..((((((((...)).)--)))))..------ ( -27.90, z-score = -1.84, R) >consensus _____UAGGAAAAUGGCGAGGAAACCGAGGAAACAGCCGACAACCGGCAACUCAAUUAUGCGCAAUUUAGACGAGUCCUUGCCAAUCUAAUUGUAGGCAUUGCAU__UGCAAAA______ .......(((...(((((((((.............((((.....))))..(((...................)))))))))))).)))...........((((.....))))........ (-21.31 = -22.14 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:29 2011