Locus 3667

Sequence ID dm3.chr2R
Location 6,978,704 – 6,978,805
Length 101
Max. P 0.530656
window5029

overview

Window 9

Location 6,978,704 – 6,978,805
Length 101
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.28
Shannon entropy 0.43520
G+C content 0.45567
Mean single sequence MFE -30.17
Consensus MFE -16.95
Energy contribution -16.82
Covariance contribution -0.13
Combinations/Pair 1.30
Mean z-score -1.38
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.07
SVM RNA-class probability 0.530656
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 6978704 101 - 21146708
AUACCCUUCGAAAGGGCAUCAAUAUGAUUGCCUUGUACUUGGGUUUGUAAGGCGAAUGGAAUGAGUUUCCAGUUUUUUUUUG---------GUAUGGUGCGAGCGGGGGG
...(((((((.....((((((.(((.(((((((((.((....))...)))))))).(((((.....))))).........).---------)))))))))...))))))) ( -31.80, z-score =  -2.04, R)
>droSim1.chr2R 5519602 110 - 19596830
AUACCCUUCGAAAGGGCAUCAAUAUGAUUGCCUUGUACUUGGGUUUGUAAAGCGAAUGGAAUGAGUUUCCAGCUUUUUUUUUUUUCAUUUGGUAGGGUGCCGGUGGGGGG
...(((((((....((((((...((((..((((.......))))....(((((...(((((.....))))))))))........)))).......))))))..))))))) ( -29.80, z-score =  -0.36, R)
>droSec1.super_1 4545763 109 - 14215200
AUACCCUUCGAAAGGGCAUCAAUAUGAUUGCCUUGUACUUGGGUUUGUAAAGCAAAUGGAAUGAGUUUCCAGUAUUUUUUUUUUUUUUUU-GUAGGGUGCUGGUUGGGGG
.((((((.((((((((((((.....)).))))))(((((...(((((.....)))))((((.....)))))))))............)))-).))))))........... ( -26.90, z-score =  -0.67, R)
>droYak2.chr2R 18974854 97 + 21139217
AUACCCUUCGAAAGGGCAUCAAUAUGAUUGCCUUGUACUUGGGUUUGUAAAGCGAAUGGAAUGAGUUUUCCGUUUUAUUUUUG--------CUGGGGUGCGGGGG-----
...((((.....((((((((.....)).))))))((((((.(((....(((..((((((((......))))))))..)))..)--------)).)))))))))).----- ( -32.30, z-score =  -2.65, R)
>droEre2.scaffold_4845 3770729 94 + 22589142
AUACCCUUCGAAAGGGCAUCAAUAUGAUUGCCUUGUACUUGGGCUUGUAAACCGAGUGGAAUGAGUUUCCAGCUUU---UUUG--------CUUGGGUGCGGGGG-----
...((((.....((((((((.....)).))))))(((((..(((....(((..((((((((.....))))).))))---)).)--------))..))))))))).----- ( -33.00, z-score =  -2.30, R)
>droAna3.scaffold_13266 697989 86 - 19884421
UCCCCCUGGGAAAGGGCAUCAAUAUGAUUGCCUUGUACUUGGGUCUGUAAAGCGG--CGGAUGAGUUUU--GUUCCGA-------------CAGGGACGGUGG-------
.(((((..((..((((((((.....)).))))))...))..)((((((......)--))))).......--(((((..-------------..))))))).))------- ( -27.20, z-score =  -0.26, R)
>consensus
AUACCCUUCGAAAGGGCAUCAAUAUGAUUGCCUUGUACUUGGGUUUGUAAAGCGAAUGGAAUGAGUUUCCAGUUUUUUUUUU_________CUAGGGUGCGGGGG_____
.((((((.....((((((((.....)).))))))........(((((.....)))))((((.....)))).......................))))))........... (-16.95 = -16.82 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:28 2011