| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,969,243 – 6,969,338 |
| Length | 95 |
| Max. P | 0.681835 |
| Location | 6,969,243 – 6,969,338 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Shannon entropy | 0.38304 |
| G+C content | 0.40453 |
| Mean single sequence MFE | -14.54 |
| Consensus MFE | -10.81 |
| Energy contribution | -11.05 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6969243 95 + 21146708 UUAUGUUUUUUAGCUUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCAUGCUGUCACGCCCCCCCCC----CCCCAAACUCCACU-------- ..........(((((((((((.....)))))))..((((((..........)).)))).....))))..............----..............-------- ( -13.10, z-score = -1.92, R) >droSim1.chr2R 5510247 88 + 19596830 UUAUGUUUUUUAGCUUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCAUGCUGUCACGCCCC-----------CCAAACUCCACU-------- ..........(((((((((((.....)))))))..((((((..........)).)))).....)))).........-----------............-------- ( -13.10, z-score = -1.06, R) >droSec1.super_1 4536500 88 + 14215200 UUAUGUUUUUUAGCUUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCAUGCUGUCACGCCCC-----------CCAAACUCCACU-------- ..........(((((((((((.....)))))))..((((((..........)).)))).....)))).........-----------............-------- ( -13.10, z-score = -1.06, R) >droYak2.chr2R 18965107 89 - 21139217 UGAUGUUUUUUAGCUUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCAUGCUGUCACGCCCCC----------CCCAAUUCCCCU-------- ..........(((((((((((.....)))))))..((((((..........)).)))).....))))..........----------............-------- ( -13.10, z-score = -1.52, R) >droEre2.scaffold_4845 3761533 86 - 22589142 UUAUGUUUUUUAGCUUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCACGCUGUCACGCCCC-------------CAACUCCGCU-------- ..........(((((((((((.....)))))))..((((((..........)).)))).....)))).........-------------..........-------- ( -13.40, z-score = -0.49, R) >droAna3.scaffold_13266 687986 92 + 19884421 UUAUGUUUUUUAGCUUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCAUGCUGUCACGCCCCCCAUU----U-CCAGGCAUCC---------- ..........(((((((((((.....)))))))..((((((..........)).)))).....))))....(((.......----.-...)))....---------- ( -16.20, z-score = -1.23, R) >droPer1.super_34 184561 99 - 916997 UUAUGUUUUUUAGCGUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUAGCGCUACACUUCAUGCUGUCACGCCUCCCCUCUUCCCUCCGCUCUCCCCU-------- ...........((((((((((.....))))))...(((((......((((((..........)))))))))))...............)))).......-------- ( -15.70, z-score = -2.09, R) >dp4.chr3 1000580 93 - 19779522 UUAUGUUUUUUAGCGUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUAGCGCUACACUUCAUGCUGUCACGCCUCCCC------CUCCGCUCUCCCCU-------- ...........((((((((((.....))))))...(((((......((((((..........)))))))))))......------...)))).......-------- ( -15.70, z-score = -1.61, R) >droWil1.scaffold_180697 3295526 107 + 4168966 UUAUGUUUUUUAACGUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCAUGGUGCCACGCCUCCCGUUUCAUGCUCACGCCCCACAAUCUUAAC ((((((..((((.((...))))))..))))))...(((.((((............((((....))))..(((.....)))...)))).)))................ ( -15.50, z-score = 0.32, R) >droMoj3.scaffold_6496 26781378 91 - 26866924 UUAAGUUUUUUAACGUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUAUGUUACACUUUAUGUCUCCACGACUCUUG--------CACCGUUUCGCU-------- ...(((.....((((((((((.....))))))...((((((((......))).))))).....(((.....))).....--------...))))..)))-------- ( -13.70, z-score = -0.21, R) >droGri2.scaffold_15245 6405296 91 + 18325388 UUAUGUUUUUUUACGUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUAUGCUACACUUCUUGCUGCCACGCAUCUUC--------CACCAUUUUGCC-------- ((((((...((((((...))))))..))))))...((((((((......)))).))))....(((......))).....--------............-------- ( -17.30, z-score = -2.11, R) >consensus UUAUGUUUUUUAGCUUUACGUAAAUUGCGUAAAUUGUGUGCAUUUUAUUACGCUACACUUCAUGCUGUCACGCCCCCC_________CCAAACUCCACU________ ..........((((.((((((.....))))))...((((((..........)).)))).....))))........................................ (-10.81 = -11.05 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:24 2011