Locus 3663

Sequence ID dm3.chr2R
Location 6,966,980 – 6,967,034
Length 54
Max. P 0.650586
window5022

overview

Window 2

Location 6,966,980 – 6,967,034
Length 54
Sequences 4
Columns 54
Reading direction forward
Mean pairwise identity 85.19
Shannon entropy 0.24038
G+C content 0.29630
Mean single sequence MFE -7.30
Consensus MFE -5.60
Energy contribution -6.48
Covariance contribution 0.88
Combinations/Pair 1.14
Mean z-score -1.65
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.34
SVM RNA-class probability 0.650586
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 6966980 54 + 21146708
UUAGUUAAACUUUGCUAAGUAAAGUAUCGUAGCUUUUUCAUAGUUUCCGUCUUC
..(((((.(((((((...)))))))....))))).................... (  -6.60, z-score =  -1.32, R)
>droSim1.chr2R 5508022 54 + 19596830
UUAGUUAAACUUUGCUAAGUAAAGUAUCUUAACUAUUUCAUAGUUUCCGUCUCU
.((((((((((((((...)))))))...)))))))................... (  -8.70, z-score =  -2.83, R)
>droSec1.super_1 4534308 54 + 14215200
UUAGUUAAACUUUGCUAAGUAAAGUAUCUUAACUAUUUCAUAGUUUCCGUCUCU
.((((((((((((((...)))))))...)))))))................... (  -8.70, z-score =  -2.83, R)
>droYak2.chr2R 18962808 54 - 21139217
UUAGUUAAGCUUUACUACACAAAGUAUGUAAACUAUUUCAUAGAUUCUGCCGCU
.......(((((((((((.....))).)))))((((...))))........))) (  -5.20, z-score =   0.36, R)
>consensus
UUAGUUAAACUUUGCUAAGUAAAGUAUCUUAACUAUUUCAUAGUUUCCGUCUCU
.((((((((((((((...)))))))...)))))))................... ( -5.60 =  -6.48 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:23 2011