| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,966,690 – 6,966,785 |
| Length | 95 |
| Max. P | 0.558317 |
| Location | 6,966,690 – 6,966,785 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 62.75 |
| Shannon entropy | 0.63368 |
| G+C content | 0.59085 |
| Mean single sequence MFE | -15.16 |
| Consensus MFE | -5.56 |
| Energy contribution | -6.04 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6966690 95 + 21146708 UACGCUCCAUUUUCCAUGUGGCACAGUUUCCACGCCACAAGC-UCCUCCGCUGACCCCCGCUUCCCACGCUUCCCCCGCUUCGCAAACCAGCCAAG--------- ...(((..........((((((...........)))))))))-......((((......((.......)).......((...))....))))....--------- ( -14.70, z-score = -1.02, R) >droAna3.scaffold_13266 685521 105 + 19884421 UACGCUCCAUUUUCCAUGUGGCACGACACACAUUCCCCUGCCCUGCCACAUUGAAUCUGGAAUCCCCCUAUUUCUCCGCAGUCCAUGCCACAGCUCUCCCCACCG ...((((((..(((.((((((((.(.((..........)).).)))))))).)))..))))................(((.....)))....))........... ( -23.40, z-score = -3.97, R) >droEre2.scaffold_4845 3759169 75 - 22589142 UACGCUCCAUUUUCCAUGUGGCACAGUUUCCACGCCGCAACC-UCCGCACCCCGCUGCACUUGCCCACAAGCCAAG----------------------------- ...((...........((((((...........))))))...-...((.....)).)).((((....)))).....----------------------------- ( -12.50, z-score = -0.36, R) >droSec1.super_1 4534025 88 + 14215200 UACGCUCCAUUUUCCAUGUGGCACAGUUUCCACGCCACAAGC-UGCUUCGCUUGCUCCCGCUUCCCCCGCUUCACCCAC-------ACCAGCCAAG--------- ...(((..........((((((...........))))))(((-.((.......))....))).................-------...)))....--------- ( -12.80, z-score = -0.31, R) >droSim1.chr2R 5507739 88 + 19596830 UACGCUCCAUUUUCCAUGUGGCACAGUUUCCACGCCACAAGC-UCCUUCGCUUGCUCCCGCUUCCCCCGCUUCACCCAC-------ACCAGCCAAG--------- ...((............(((((...........)))))((((-......))))))....((.......)).........-------..........--------- ( -12.40, z-score = -1.15, R) >consensus UACGCUCCAUUUUCCAUGUGGCACAGUUUCCACGCCACAAGC_UCCUCCGCUGGCUCCCGCUUCCCCCGCUUCACCCAC_______ACCAGCCAAG_________ ................((((((...........)))))).................................................................. ( -5.56 = -6.04 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:22 2011