| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,951,792 – 6,951,884 |
| Length | 92 |
| Max. P | 0.974588 |
| Location | 6,951,792 – 6,951,884 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 88.18 |
| Shannon entropy | 0.20735 |
| G+C content | 0.57332 |
| Mean single sequence MFE | -37.66 |
| Consensus MFE | -26.88 |
| Energy contribution | -27.88 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6951792 92 - 21146708 GGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGGCACAAGACCCGUAGUGCGGUUGCCACGAAAA---GGGGCGCAUUCCAGUG (((((....(((.(((((((.....))).))))((((((((((((........))))))))....)))).......---..)))..))))).... ( -34.50, z-score = -1.63, R) >droSim1.chr2R 5492426 89 - 19596830 GGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGG---AAGACCCGUAGUGCGGUUGCCCCGAAAA---GGGGCGCAUUCCAGUG (((((....(((.(((((((.....))).))))))).((((((((---.....))))))))..((.(((((.....---)))))))))))).... ( -42.10, z-score = -3.85, R) >droSec1.super_1 4519194 89 - 14215200 GGAAUAAAAGCCACAUGGCCACAUGAGCACAUGGGCACAUUGCGG---AAGACCCGUAGUGCGGUUGCCCCGAAAA---GGGGCGCAUUCCAGUG (((((...((((.....(((.((((....))))))).((((((((---.....)))))))).))))(((((.....---)))))..))))).... ( -40.00, z-score = -3.93, R) >droYak2.chr2R 18947769 89 + 21139217 GGAAUAAAAGCCACAUGACCACAUGGGCACUAUGCCACAUUGCGG---AAGACCCGGAGUGUGGUUGCCCCGAAAA---GGGGCGCAUUCCAGUG (((((....(((.((((....))))))).....((((((((.(((---.....))).)))))))).(((((.....---)))))..))))).... ( -42.00, z-score = -4.76, R) >droEre2.scaffold_4845 3744784 84 + 22589142 GGAAUAAAAGCCACAUGGCCACAUG--------GCCACAUUGCGG---AAUACCCGGCGUGCGGUUGGCCCAAAAAAAGGGGGCGCAUUCCAGUG (((((...((((.(((((((....)--------)))......(((---.....)))..))).)))).((((.........))))..))))).... ( -29.70, z-score = -0.52, R) >consensus GGAAUAAAAGCCACAUGGCCACAUGGGCACAUGGGCACAUUGCGG___AAGACCCGUAGUGCGGUUGCCCCGAAAA___GGGGCGCAUUCCAGUG (((((...((((.((((....))))............((((((((........)))))))).))))(((((........)))))..))))).... (-26.88 = -27.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:21 2011