| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,949,068 – 6,949,173 |
| Length | 105 |
| Max. P | 0.972175 |
| Location | 6,949,068 – 6,949,173 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Shannon entropy | 0.44421 |
| G+C content | 0.49680 |
| Mean single sequence MFE | -33.37 |
| Consensus MFE | -25.15 |
| Energy contribution | -25.43 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.972175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6949068 105 + 21146708 GGCAACAAUCAUAAAUGUCAUGGAGAUGUUGCCAGGGCCGAGCUUUUCCAGGCUUGGCCCAUAAUUAAAAUGCCAGG---------UAGUAG--GGCUAGCAGAGCAACACAGCAG-- (((((((.((((.......))))...))))))).((((((((((......))))))))))..........((((.(.---------(((...--..))).).).))).........-- ( -36.90, z-score = -2.39, R) >droSim1.chr2R 5489773 92 + 19596830 GGCAACAAUCAUAAAUGUCAUGGAGAUGUUGCCAGGGCCGAGCUUUUCCAGGCUUGGGCCAUAAUUAAAAUGCCAGGGAG----AGUAGUAG--GGCC-------------------- (((((((.((((.......))))...))))))).((.((..((((((((.(((..................))).)))))----)))....)--).))-------------------- ( -30.07, z-score = -1.37, R) >droSec1.super_1 4516528 91 + 14215200 GGCAACAAUCAUAAAUGUCAUGGAUAUGUUGCC-GGGCCGAGCUUUUCCAGGCUUGGCCCAUAAUUAAAAUGCCAGGGAG----AGUAGUAG--GGCC-------------------- ((((((((((............))).)))))))-((((((((((......))))))))))...........(((..(...----.....)..--))).-------------------- ( -34.00, z-score = -2.54, R) >droYak2.chr2R 18944990 111 - 21139217 GGCGGCAAUCAUAAAUGUCAUGGAGAUGUUGCCAGGGCCGAGCUUUUCCAGUCUUGGCUCAUAAUUAAAAUUCCAGGGAGUAGCAGUAGUAG--GGC---CAAAACAACACAGCAC-- .((((((........)))).((((((.(((((....))..))).))))))((.(((((((.........((((....)))).((....)).)--)))---))).))......))..-- ( -28.60, z-score = -0.49, R) >droEre2.scaffold_4845 3742199 101 - 22589142 GGCAGCAAUCAUAAAUGUCAUGGAGAUGUUGCCAGGGCCG-GCUUUUCCAGGCUUGGCUCAUAAUUAAAAUGCCAGG---------CAGUUG--GGC---CAAAACAACACGGCAC-- (((((((.((((.......))))...)))))))...((((-..........(((((((.............))))))---------).((((--...---.....)))).))))..-- ( -34.42, z-score = -1.67, R) >droAna3.scaffold_13266 656081 116 + 19884421 GGCAACAAUCAUAAAUGUCAGGGAGCCGUUGCCAGGGCCG-GCUUUUCCAGGCUUGGCCUAUAAUUAAAAUGCCAGGCCG-GCAGACAACAGUCAGUAGAGACAGUAGGAUAGUAGAC ....((.(((.....((((.((((((((..((....))))-))))..)).((((((((.............)))))))).-((.(((....))).))...))))....))).)).... ( -36.22, z-score = -1.72, R) >consensus GGCAACAAUCAUAAAUGUCAUGGAGAUGUUGCCAGGGCCGAGCUUUUCCAGGCUUGGCCCAUAAUUAAAAUGCCAGGGAG____AGUAGUAG__GGC___CA_A_CAACACAGCA___ (((((((.((((.......))))...))))))).((((((((((......)))))))))).......................................................... (-25.15 = -25.43 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:20 2011