| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,947,695 – 6,947,787 |
| Length | 92 |
| Max. P | 0.633862 |
| Location | 6,947,695 – 6,947,787 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 63.45 |
| Shannon entropy | 0.65890 |
| G+C content | 0.49931 |
| Mean single sequence MFE | -23.76 |
| Consensus MFE | -10.66 |
| Energy contribution | -9.94 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6947695 92 + 21146708 UGUGAGUGGCUCACAAGGAGAUUCACCCA------AACGCAGCCACUGCGUUUCCUCCCUUGGUAAUUUUAAUCCCAUCUGGGAAGAGCACUUGCCGU .(..((((.(((.(((((.((.......(------(((((((...))))))))..)))))))..........((((....)))).)))))))..)... ( -32.40, z-score = -2.97, R) >droSim1.chr2R 5488460 89 + 19596830 UGUGAGCCAC---CAAGGAGAUUCACCCA------AACGCAGCCACUGCGCUUCGUCCCUUGGUAAUUUUAAUCCCAUCUGGGAAGAGCACUUGCCGU .(((..(.((---(((((.(((.......------..(((((...)))))....))))))))))........((((....)))).)..)))....... ( -25.02, z-score = -1.32, R) >droSec1.super_1 4515211 88 + 14215200 UGUGAGCCAC---CAAGGAGAUUCACCUA------A-CGCGGCCACUGCGCUUCGACCCUUGGCAAAUUUCAUCUCAUACUGCGAAGACUCUUGCCGU .(((.(((.(---..(((.......))).------.-.).))))))...............(((((...((.((.(.....).)).))...))))).. ( -17.60, z-score = 0.74, R) >droYak2.chr2R 18943578 97 - 21139217 -UCCAGCAACAAGGAGUUGGUUCCACCCAUGGAACAGUCCAUGGAAUGCGUUUUGUCCCUUGGUAAUUUUAAUCCCAUCUGGGAAGAGCACUUGCCUU -....(((....((((....))))..(((((((....)))))))..)))(((((.((((.(((...........)))...)))))))))......... ( -27.70, z-score = -0.77, R) >droEre2.scaffold_4845 3740993 69 - 22589142 -----------------------------UGUUAGAAGGAGUUGCUUGCCUUUCGUCCCUUGGUAAUUUUAAUCCCAUCUGGGAAGAGCACUUGCCUU -----------------------------......((((...((((((((...........)))........((((....)))).)))))....)))) ( -16.10, z-score = -0.19, R) >consensus UGUGAGCCAC___CAAGGAGAUUCACCCA______AACGCAGCCACUGCGUUUCGUCCCUUGGUAAUUUUAAUCCCAUCUGGGAAGAGCACUUGCCGU .....................................(((((...)))))...........(((((..((..((((....))))..))...))))).. (-10.66 = -9.94 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:19 2011