| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,945,115 – 6,945,181 |
| Length | 66 |
| Max. P | 0.569131 |
| Location | 6,945,115 – 6,945,181 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 85.94 |
| Shannon entropy | 0.25602 |
| G+C content | 0.48651 |
| Mean single sequence MFE | -17.45 |
| Consensus MFE | -12.22 |
| Energy contribution | -12.83 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6945115 66 + 21146708 UGCUUUCGCGG--CGACAUUGUUGCCAAUUUGAAUAUGCGAAAUGGCAGCGAAGAAAGGAAAACAGGG ..(((((..(.--...).(((((((((.((((......)))).))))))))).))))).......... ( -20.50, z-score = -2.55, R) >droSim1.chr2R 5485955 62 + 19596830 UGCUUUCGCGG--CGACAUUGUUGCCAAUUUGAAUAUGCGAAAUGGCAGCGAAG----GAAAACAGGG ..(((((((((--((((...))))))..........(((......)))))))))----)......... ( -20.60, z-score = -2.63, R) >droSec1.super_1 4512709 62 + 14215200 UGCUUUCGCGG--CGACAUUGUUGCCAAUUUGAAUAUGCGAAAUGGCAGAGAAG----GAAAACAGGG (((((((((((--((((...)))))).((......)))))))..))))......----.......... ( -15.20, z-score = -1.14, R) >droYak2.chr2R 18940771 62 - 21139217 UGCUUUCGGGG--CGACAUUGUUGCCAAUUUGAAUAUGCGAAAUGGCAGCGGAG----GAAAACAGGG ..(((((..(.--...)...(((((((.((((......)))).)))))))))))----)......... ( -17.70, z-score = -1.97, R) >droEre2.scaffold_4845 3738528 64 - 22589142 UGCUUUCGGGGGGCGACAUUGUUGCCAAUUUGAAUAUGCGAAAAGGCAGCGCAG----GAAAACAGGG (((..(((.....)))....((((((..((((......))))..))))))))).----.......... ( -14.60, z-score = -0.18, R) >droAna3.scaffold_13266 650733 56 + 19884421 UGCUCCCCGG---CAACAUUGUUGCCAAUUUGAAUAUGCCAAAUGGCAGCACCA----GAAAG----- (((.....((---((((...))))))..........((((....)))))))...----.....----- ( -16.10, z-score = -2.14, R) >consensus UGCUUUCGCGG__CGACAUUGUUGCCAAUUUGAAUAUGCGAAAUGGCAGCGAAG____GAAAACAGGG ..................(((((((((.((((......)))).)))))))))................ (-12.22 = -12.83 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:18 2011