| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,930,327 – 6,930,425 |
| Length | 98 |
| Max. P | 0.923968 |
| Location | 6,930,327 – 6,930,425 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.65 |
| Shannon entropy | 0.30748 |
| G+C content | 0.45598 |
| Mean single sequence MFE | -27.47 |
| Consensus MFE | -21.18 |
| Energy contribution | -21.73 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6930327 98 + 21146708 GCUCCGCUGUGUAGGUAGAAAUAUACGAGUA--------UACGUAUACCUUGGAGACAAAUGUCGAGCCAGGGGCAAACUUUUAAUGAAGGCCUAAGCAAGCAAAU .....(((((.(((((.....((((((....--------..))))))((((((.(((....)))...)))))).....((((....))))))))).)).))).... ( -30.50, z-score = -2.93, R) >droAna3.scaffold_13266 636484 82 + 19884421 ACCCCGUCGAAUAUAUA-----------G-------------GUAUACCUUGGAGACAAAUGUCGUGCCAGGGGCAAACUUUUAAUGAAGGCCUAAGCAAGCAAAU ...............((-----------(-------------((...((((((.(((....)))...)))))).....((((....)))))))))........... ( -20.60, z-score = -1.08, R) >droEre2.scaffold_4845 3724238 89 - 22589142 GCUCCGCUGUGUAGCUACGU-------AGUA----------CGUAUACCUUGGAGACAAAUGUCGAGCCAGGGGCAAACUUUUAAUGAAGGCCUAAGCAAGCAAAU (((..(((..((.((((((.-------....----------))))..((((((.(((....)))...))))))))...((((....))))))...))).))).... ( -25.90, z-score = -1.24, R) >droYak2.chr2R 18925634 106 - 21139217 GCGCCGCUGUGUAGGUACGUGUAUACGAGUAUUCGAGUAUUCGUAUACCUUGGAGACAAAUGUCGAGCUAGGGGCAAAGUUUUAAUGAAGGCCUAAGCAAGCAAAU .....(((((.(((((.(((.(((((((((((....)))))))))))((((((.(((....)))...))))))...........)))...))))).)).))).... ( -34.00, z-score = -2.52, R) >droSec1.super_1 4497736 90 + 14215200 GCUACGCUGUGUAGGU--------ACGAGUA--------UACGUAUACCUUGGAGACAAAUGUCGAGCCAGGGGCAAACUUUUAAUGAAGGCCUAAGCAAGCAAAU .....(((((.(((((--------(((....--------..)))...((((((.(((....)))...)))))).....((((....))))))))).)).))).... ( -26.90, z-score = -2.02, R) >droSim1.chr2R 5470606 90 + 19596830 GCUCCGCUGUGUAGGUACGA------GGAUA----------CGUAUACCUUGGAGACAAAUGUCGAGCCAGGGGCAAACUUUUAAUGAAGGCCUAAGCAAGCAAAU .....(((((.((((((((.------.....----------)))...((((((.(((....)))...)))))).....((((....))))))))).)).))).... ( -26.90, z-score = -1.67, R) >consensus GCUCCGCUGUGUAGGUACG_______GAGUA__________CGUAUACCUUGGAGACAAAUGUCGAGCCAGGGGCAAACUUUUAAUGAAGGCCUAAGCAAGCAAAU .....((((..(((((...............................((((((.(((....)))...)))))).....((((....)))))))))..).))).... (-21.18 = -21.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:12 2011