| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,911,987 – 6,912,079 |
| Length | 92 |
| Max. P | 0.601584 |
| Location | 6,911,987 – 6,912,079 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 50.66 |
| Shannon entropy | 0.79344 |
| G+C content | 0.44931 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -7.40 |
| Energy contribution | -8.53 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.63 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.601584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6911987 92 + 21146708 ---------GCAUACCUUCCAGGUUAGGGGAAACA-ACUGCAC--AGCUGGCGCGGAGUUGGGAGCGUAAUUCUCCUGGCUCAACACCUGCUACUUUCCUCAUU ---------....(((.....)))..((((((((.-...)...--(((.((.(..((((..((((.......))))..))))..).)).)))..)))))))... ( -29.90, z-score = -1.43, R) >droSim1.chr2L 1040915 96 - 22036055 CCAAGACUU-CUUUGU-GAAAGGCCAAAAGAAUCUUAUUGCCUUGAGGCAAUCA-UAGCUCGUAUC----UCUGCUGGAGUAUGU-CCAGCGAUUUUCUUCAUC ..((((.((-((((.(-(......))))))))))))((((((....))))))..-...........----..(((((((.....)-))))))............ ( -22.10, z-score = -0.44, R) >droYak2.chrU 19230817 97 + 28119190 CCAAGAUUUGCAUUGCCGAAAGGCCAAGAGAAUCGUAUUGCCUUGAGGCAAUCA-UAGCUCGUAUC----UCUGCUGGAGUGU-U-CCAGCGAUUUUCUUCAUC ..............(((....))).((((((((((.((((((....))))))).-...........----...(((((.....-.-)))))))))))))).... ( -32.90, z-score = -2.98, R) >droEre2.scaffold_4929 22625035 91 + 26641161 -------------UGCAAUGAGUCCGAAUAAUUAAUAUCGGCUGAUGCUGUUUAAUAUUUGGGAUCGUAUUGUUUUAGAGCUUGCGCCAGCUAUUUUUCUCAUC -------------.((((((..((((((((.((((...((((....)))).))))))))))))....)))))).....((((......))))............ ( -20.60, z-score = -0.75, R) >consensus __________CAUUGC_GAAAGGCCAAAAGAAUCAUAUUGCCUUGAGCCAAUCA_UAGCUCGGAUC____UCUGCUGGAGUAUGC_CCAGCGAUUUUCCUCAUC .........................(((((((((...(((((....)))))......................(((((........)))))))))))))).... ( -7.40 = -8.53 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:07 2011