| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,519,412 – 2,519,516 |
| Length | 104 |
| Max. P | 0.647999 |
| Location | 2,519,412 – 2,519,516 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.82 |
| Shannon entropy | 0.51238 |
| G+C content | 0.46779 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -15.19 |
| Energy contribution | -14.72 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2519412 104 + 23011544 ---ACU-GCCAGGACUCGCAUUUCGC-CCGCUGCGUCUUGGCCGUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC ---...-(((..(((((((.....))-..(((((....((((....))))......(((..(((((((....)))).)))..))))))))........)))))..).)) ( -32.10, z-score = -1.10, R) >droSim1.chr2L 2482060 104 + 22036055 ---ACU-GCCAGGACUCGCAUUCCGC-CCGCUGCGUCUUGGCCGUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC ---...-(((..(((((((.....))-..(((((....((((....))))......(((..(((((((....)))).)))..))))))))........)))))..).)) ( -32.10, z-score = -1.02, R) >droSec1.super_5 693552 104 + 5866729 ---ACU-GCCAGGACUCGCAUUCCGC-CCGCUGCGUCUUGGCCGUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC ---...-(((..(((((((.....))-..(((((....((((....))))......(((..(((((((....)))).)))..))))))))........)))))..).)) ( -32.10, z-score = -1.02, R) >droYak2.chr2L 2512049 104 + 22324452 ---ACU-GCUAGGACUCCCAUUUCGC-CCGCUGCGUCUUGGCCGUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC ---...-(((..((((((..(((...-..(((((....((((....))))......(((..(((((((....)))).)))..))))))))..)))..)))))).))).. ( -31.40, z-score = -1.37, R) >droEre2.scaffold_4929 2565548 98 + 26641161 ----------AGGACUCCCAUUCCGC-CCGCUGCGUCUUGGCCGUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC ----------..((((((........-..(((((....((((....))))......(((..(((((((....)))).)))..)))))))).......))))))...... ( -30.03, z-score = -1.61, R) >droAna3.scaffold_12913 275359 104 - 441482 ---ACUAGCUCGCAUCCCCAUUCUUC-CCACUGCGUCUUGGCCG-GGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC ---........((((.....(((((.-...(((((.(.((((((-((.((.....)).))))))))..((((....))))..).)))))......))))).....)))) ( -24.30, z-score = 0.07, R) >dp4.chr4_group4 1809155 88 + 6586962 --------------------CCCGGC-CCGGCCCGUCUCGGCCAUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC --------------------.(((((-(.((((......))))..))))..((((((((..(((((((....)))).)))..)))).))))......)).......... ( -27.90, z-score = -1.59, R) >droPer1.super_10 812463 88 + 3432795 --------------------CCCGGC-CCGGCCCGUCUCGGCCAUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC --------------------.(((((-(.((((......))))..))))..((((((((..(((((((....)))).)))..)))).))))......)).......... ( -27.90, z-score = -1.59, R) >droWil1.scaffold_180703 3083486 106 + 3946847 ---GCUGCUUUCUACUCCUAUUUUGUGCUCUUGCGUCUUGGUCACAGCUAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGUCGCAUAAAAAGGAGUUAAGUGC ---((.((((...((((((.((((((((....(((.(..(((.(((..(((((..((((...)))).)))))..))))))..).))).)))))))))))))).)))))) ( -32.20, z-score = -3.74, R) >droMoj3.scaffold_6500 31015692 100 - 32352404 --------UUUUCACUUCAGAGGGAAGUUGGCUCGGUGAGGCGAC-GCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGUAGCGUAAAAAGGAGUUAAGUGC --------.....(((((.....)))))((((((((((......)-)))...(((((((..(((((((....)))).)))..)))).)))........))))))..... ( -24.20, z-score = -0.30, R) >droGri2.scaffold_15252 5292753 93 - 17193109 --------UUUUCACUUU------AGUUCAGUUUACUG-GGCGAU-GCCAUUGUUUGACUUGGUCAUUAGCAAAUGUACUUUGUCGCAGAGUAAAAAGGAGUUAAGUGC --------....(((((.------(.(((..((((((.-(((...-))).((((..(((..(((((((....)))).)))..)))))))))))))..))).).))))). ( -23.20, z-score = -1.24, R) >droVir3.scaffold_12963 9904405 108 + 20206255 UUUUCCCUUCCUCACUUUUCUGGUACUUCCCCACGUUGAGGAGAC-GCUAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCGUAAAAAGGAGUUAAGUGC ..((((.(((((((.......((.....))......)))))))((-(((...((..(((..(((((((....)))).)))..)))))))))).....))))........ ( -23.92, z-score = -0.28, R) >consensus ____CU__CUAGGACUCCCAUUCCGC_CCGCUGCGUCUUGGCCAUGGCCAUUGUUUGACUUGGUCAUUAGUAAAUGUACUUUGUCGCAGCAUAAAAAGGAGUUAAGUGC ...........................((..........(((....)))..((((((((..(((((((....)))).)))..)))).))))......)).......... (-15.19 = -14.72 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:11:35 2011