| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,895,963 – 6,896,058 |
| Length | 95 |
| Max. P | 0.933685 |
| Location | 6,895,963 – 6,896,058 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 91.83 |
| Shannon entropy | 0.16086 |
| G+C content | 0.39254 |
| Mean single sequence MFE | -27.26 |
| Consensus MFE | -21.75 |
| Energy contribution | -22.63 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6895963 95 - 21146708 UGGCAAUGGCUGGCUGUUAAGGGCGCAAUGGAAGCAU-----UUUCCAG-CACGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAAGAAGCCAUAAACA ((((((((((..((((..(((.((.........)).)-----))..)))-)..))))))............(((((((....)))))))..))))...... ( -26.40, z-score = -1.73, R) >droSim1.chr2R 5450089 95 - 19596830 UGGCAAUGGCUGGCUGUUAAGGGCGCAAUGGAAGCAU-----UUUCCAG-CACGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAAGAAGCCAUAAACA ((((((((((..((((..(((.((.........)).)-----))..)))-)..))))))............(((((((....)))))))..))))...... ( -26.40, z-score = -1.73, R) >droSec1.super_1 4477669 95 - 14215200 UGGCAAUGGCUGGCUGUUAAGGGCGAAAUGGAAGCAU-----UUUCCAG-CACGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAAGAAGCCAUAAACA ((((((((((..((((..(((.((.........)).)-----))..)))-)..))))))............(((((((....)))))))..))))...... ( -26.40, z-score = -2.10, R) >droYak2.chr2R 18904519 100 + 21139217 UGGCAAUGGCUGGCUGUUAAGGGCGCAAUGGAAGCAUAGCGCUUUCCAG-CACGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAAGAAGCCAUAAACA ((((((((((..((((...(((((((.(((....))).))))))).)))-)..))))))............(((((((....)))))))..))))...... ( -35.20, z-score = -3.59, R) >droEre2.scaffold_4845 3704516 95 + 22589142 UGGCAAUGGCUGGCUGUUAAGGGCGCAAUGGAAGCAU-----UUUCCAG-CACGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAAGAAGCCAUAAACA ((((((((((..((((..(((.((.........)).)-----))..)))-)..))))))............(((((((....)))))))..))))...... ( -26.40, z-score = -1.73, R) >droAna3.scaffold_13266 615857 95 - 19884421 UGGCAAUGGCUGGCAGUUAAGGGCGCAAUGGAAGCAU-----UUUCCAA-CACGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAAGAAGCCAUAAACA .....((((((...(((.((.((((...((((((...-----)))))).-..)))).))))).........(((((((....))))))).))))))..... ( -24.90, z-score = -1.98, R) >droWil1.scaffold_180697 3223396 86 - 4168966 ----AAUGGCUGGCAAUGA------CUGUGGAAACAU-----UUUCCAGUCGUGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAACAAGCCAUAAACA ----.((((((((((.(((------(((.((((....-----))))))))))))))((((........))))..................))))))..... ( -25.10, z-score = -4.11, R) >consensus UGGCAAUGGCUGGCUGUUAAGGGCGCAAUGGAAGCAU_____UUUCCAG_CACGCCGUUACUUUUAAUUAACUUUGAUUUUCAUUAAAGAAGCCAUAAACA .....((((((......(((.((((...((((((........))))))....)))).)))...........(((((((....))))))).))))))..... (-21.75 = -22.63 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:06 2011