| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,894,665 – 6,894,779 |
| Length | 114 |
| Max. P | 0.688697 |
| Location | 6,894,665 – 6,894,779 |
|---|---|
| Length | 114 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.56146 |
| G+C content | 0.49167 |
| Mean single sequence MFE | -37.06 |
| Consensus MFE | -19.68 |
| Energy contribution | -20.17 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6894665 114 + 21146708 UCCGUUUUAGCUUUUGCUUU-----CGAAGUCCCGGGGUCCGGCAAUCAAUGGCAAUUGCAUUUGGCAAUUGGCAGGCCAUCAAGAUUAGCAAGAGCAGAACAGGUGGCUUGUGCAACU ...(((((.(((((((((.(-----(...(..(....)..)(((......((.(((((((.....))))))).)).))).....))..)))))))))))))).(((.((....)).))) ( -37.20, z-score = -1.01, R) >droAna3.scaffold_13266 614445 105 + 19884421 ------UUUGUUUCUGCCAC------UGCAUCUGCAGCUCCGGCAAUCAAUGGCAAUUGCAUUUGGCAAUUGGCAGGCCAUCAAGAUUAGUGCCGGCCAGGAGGCU--CUUGUUAAAUU ------.........(((.(------(((....)))).((((((......((.(((((((.....))))))).))((((..........).))).))).)))))).--........... ( -32.60, z-score = 0.06, R) >droEre2.scaffold_4845 3703294 119 - 22589142 UCUGUUUUUGCUUUUGCUCUGCCUCCGGAGUCCAGGAGUCCGGCAAUCAAUGGCAAGAGCAUUUGGCAAUUGGCAGGCCAUCAAGAUUAGCCAGAGCCGAACAGGUGGCUUGUGCAACU .......(((((..(((((((((.(((((.((...)).)))))........))).))))))...)))))(((((((((((((....(..((....))..)...)))))))))).))).. ( -43.70, z-score = -1.18, R) >droYak2.chr2R 18903286 119 - 21139217 UUUGUUUUUGCUUUUGCCUUUGCUUUUGGAGUCCGGGGUCCGGCAAUCAAUGGCAAUUGCGUUUGGCAAUUGGCAGGCCAUCAAGAUUAGCAGGAGCAGAACAGGUGGCUUGUGCAACU .((((..(((((..(((..(((((.((((...((((...))))...)))).)))))..)))...)))))...((((((((((....((.((....)).))...)))))))))))))).. ( -38.80, z-score = -0.22, R) >droSec1.super_1 4476407 114 + 14215200 UUCCUUUUUGCUUUUGCUUU-----CGGAGUCCCGGGGUCCGGCAAUCAAUGGCAAUUGCAUUUGGCAAUUGGCAGGCCAUCAAGAUUAGCAGGAGCAGAACAGGUGGCUAGUGCAACU ..((((((((((((((((.(-----((((.(.....).)))(((......((.(((((((.....))))))).)).))).....))..))))))))))))).)))..((....)).... ( -42.30, z-score = -2.13, R) >droSim1.chr2R 5448829 114 + 19596830 UUCGUUUUUGCUUUUGCUUU-----UGGAGUCCCGGGGUCCGGCAAUCAAUGGCAAUUGCAUUUGGCAAUUGGCAGGCCAUCAAGAUUAGCAGGAGCAGAACAGGUGGCUAGUGCAACU ...(((((.(((((((((..-----((((.(.....).)))(((......((.(((((((.....))))))).)).)))......)..)))))))))))))).(((.((....)).))) ( -38.70, z-score = -1.28, R) >droMoj3.scaffold_6496 26740229 86 - 26866924 ------UUUGUUGUUGUUGCAGCUGCCAAUGUCAGG----CGGCAAUCGACAGCAAUUGCAUUUGGCAAUCGGUAGUCCAUCAAGAUUAACGCAAG----------------------- ------...((((((((((..((((((.......))----))))...))))))))))(((.....)))..((.(((((......))))).))....----------------------- ( -26.10, z-score = -1.48, R) >consensus UUCGUUUUUGCUUUUGCUUU_____CGGAGUCCCGGGGUCCGGCAAUCAAUGGCAAUUGCAUUUGGCAAUUGGCAGGCCAUCAAGAUUAGCAGGAGCAGAACAGGUGGCUUGUGCAACU .........((((((((.................(.....)(((......((.(((((((.....))))))).)).)))..........))))))))...................... (-19.68 = -20.17 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:05 2011