| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,880,134 – 6,880,215 |
| Length | 81 |
| Max. P | 0.785476 |
| Location | 6,880,134 – 6,880,215 |
|---|---|
| Length | 81 |
| Sequences | 4 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 79.92 |
| Shannon entropy | 0.33076 |
| G+C content | 0.48229 |
| Mean single sequence MFE | -20.93 |
| Consensus MFE | -16.08 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6880134 81 - 21146708 UGGGAUUUAGCAUGGCGAACGGCUCGCCAUAUUGUUGUACCACCCCCACAACACAAAACAAAAAAAAGCCAGCUAAGCUGU ..((.(((((((((((((.....)))))))..((((((.........))))))..................)))))))).. ( -20.70, z-score = -1.48, R) >droSim1.chr2R 5435408 80 - 19596830 UGGGUUUUAACAUGGCGAACGGCUCGCCAUAUUGUUGUGCCACCCCCACAAAAACAAA-GAAAAAACACCAGCUAAGCUGU .((((..(((((((((((.....))))))...)))))....)))).............-..........((((...)))). ( -19.20, z-score = -0.78, R) >droSec1.super_1 4462068 79 - 14215200 UGGGUUUUAACAUGGCGAACGGCUCGCCAUAUUGUUGUACCACCCUCACAAAAACAAA--AAAAAACACCAGCUAAGCUGU .((((..(((((((((((.....))))))...)))))....)))).............--.........((((...)))). ( -19.60, z-score = -1.94, R) >droYak2.chr2R 18888004 67 + 21139217 UGGGCUUUAGCCUGGCGACCAGCUCGCCAUGUUGAUGUGCCACCC--------------AAAAAACAGCCAGCUGAGCUGU ..(((.(((((.((((((.....)))))).)))))...)))....--------------.....((((((....).))))) ( -24.20, z-score = -1.64, R) >consensus UGGGUUUUAACAUGGCGAACGGCUCGCCAUAUUGUUGUACCACCCCCACAAAAACAAA_AAAAAAAAACCAGCUAAGCUGU ..(((..(((.(((((((.....))))))).)))....)))............................((((...)))). (-16.08 = -16.07 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:01 2011