| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,873,521 – 6,873,655 |
| Length | 134 |
| Max. P | 0.865511 |
| Location | 6,873,521 – 6,873,655 |
|---|---|
| Length | 134 |
| Sequences | 5 |
| Columns | 151 |
| Reading direction | forward |
| Mean pairwise identity | 80.46 |
| Shannon entropy | 0.31941 |
| G+C content | 0.52048 |
| Mean single sequence MFE | -42.28 |
| Consensus MFE | -36.54 |
| Energy contribution | -37.42 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6873521 134 + 21146708 -----------------CAUACAACCGGCAUACCCUUUUCCUACCCUCUUUGAAGCACCCGGCGGACCUGGCCCAAUAGUUGCCCAUUACUCAGGCUUUGGAUAUUGGCCAUUUCAACGGGCCGGGCCCUAAAGUACGUGUAUGCAAUGAC -----------------((((((.((((......((((.............))))...)))).((.((((((((...(((........)))..((((.........))))........)))))))).)).........))))))....... ( -35.72, z-score = 0.58, R) >droSim1.chr2R 5428810 151 + 19596830 CAUAUAUACGAUAUUAACAGACAAUCGGCAUACCCUUUCCCUACCCUCUUUGAAGCACCCGGCGGACCUGGCCCAAUAGUUGGCCAUUACUCAGGCUCUGGAUAUUGGCCAUUUCAACGGGCCGGGCCCUAAAGUACGUGUAUGCAAUGAC (((.....((((...........))))((((((.(...................((.....))((.((((((((......((((((.((..(((...)))..)).)))))).......)))))))).))........).)))))).))).. ( -46.02, z-score = -1.42, R) >droSec1.super_1 4455516 151 + 14215200 UAUAUAUAUGAUAUUAACAGACAAUCGGCAUACCCUUUCCCUACCCUCUUUGAAGCACCCGGCGGACCUGGCCCAAUAGUUGGCCAUUACUCAGACUCUGGAUAUUGGCCAUUUCAACGGGCCGGGCCCUAAAGUACGUGUAUGCAAUGAC ...........................((((((.(...................((.....))((.((((((((......((((((.((..(((...)))..)).)))))).......)))))))).))........).))))))...... ( -44.22, z-score = -1.48, R) >droYak2.chr2R 18881355 120 - 21139217 ------------------------CAUAUAUACCCUUUCCCUACCCUUUUUGCCACACUCGGCGGACCUGGCC-AAUAGCUGGCCAUUACUCAGGCUCUGGAUAUUGGCCAUUUCAACGGGCCAGGCCCAAAAGU------AUGCAAUGAC ------------------------(((.(((((..................(((......)))((.(((((((-......((((((.((..(((...)))..)).))))))........))))))).))....))------)))..))).. ( -39.84, z-score = -2.46, R) >droEre2.scaffold_4845 3683550 123 - 22589142 ----------------------GAUCGGCAUACCCUUUCCCUACCCUUUGCGAAGCACCCGGCGGACCUGGCCCAAUAGUUGGCCAUUACUCAGGCUCUGGAUAUUGGCCAUUCCAACGGGCCAGGCCCAAAAGU------GUGCAAUGAG ----------------------.....((((((..........((...(((...)))...)).((.((((((((......((((((.((..(((...)))..)).)))))).......)))))))).))....))------))))...... ( -45.62, z-score = -1.99, R) >consensus _________________CA_ACAAUCGGCAUACCCUUUCCCUACCCUCUUUGAAGCACCCGGCGGACCUGGCCCAAUAGUUGGCCAUUACUCAGGCUCUGGAUAUUGGCCAUUUCAACGGGCCGGGCCCUAAAGUACGUGUAUGCAAUGAC ...........................((((((.....................((.....))((.((((((((......((((((.((..(((...)))..)).)))))).......)))))))).))..........))))))...... (-36.54 = -37.42 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:14:00 2011