| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,856,160 – 6,856,265 |
| Length | 105 |
| Max. P | 0.628730 |
| Location | 6,856,160 – 6,856,265 |
|---|---|
| Length | 105 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 69.98 |
| Shannon entropy | 0.61204 |
| G+C content | 0.46023 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -10.33 |
| Energy contribution | -10.38 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.628730 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 6856160 105 - 21146708 GAAAAUUAGCCAAAUGGCCGCUAAGUGUUCGCUCUGCGCUUAAGCGGCAUAAAAAUG-UGCAACUUUCCA----UGCAGAUGCGCCUGCCGCACUCUCAUUUCUUUUUCU----- (((((...(((....)))...(((((((.......))))))).((((((.....((.-((((........----)))).)).....))))))............))))).----- ( -29.00, z-score = -1.37, R) >droAna3.scaffold_13266 576515 99 - 19884421 GAAAAUGAGCCAAAUAGCUGGUAGGUGUUCACUUUGCGUUUAAGCGGCAUAAAAAUG-UGCAACUUUCCA----UGCGGUU---CCUGCCACAGAGCAGAUUAUCCU-------- .......(((......)))(((((.(((((.....((((..(((..(((((....))-)))..)))...)----)))(((.---...)))...)))))..)))))..-------- ( -24.10, z-score = -0.07, R) >droPer1.super_34 85539 114 + 916997 GUGAAUUAGCCAAAUGGCCGCCAAGUGUUCGCUUUGCGUUAAAGCGGCAUAAAAAUA-UGCAGCUCUUCAGGGCUGCGGCUGGGACAGAUGGCCUCCGGGGGCCCCCUCUGUUCU ........(((....))).(((..((((.(((((((...))))))))))).......-.(((((((....)))))))))).((((((((.(((((....)))))...)))))))) ( -48.80, z-score = -2.18, R) >dp4.chr3 899336 114 + 19779522 GUGAAUUAGCCAAAUGGCCGCCAAGUGUUCGCUUUGCGUUAAAGCGGCAUAAAAAUA-UGCAGCUCUUCAGGGCUGCGGCUGGGACAGAUGGCCUCCGGGGGCCCCCUCUGUUCU ........(((....))).(((..((((.(((((((...))))))))))).......-.(((((((....)))))))))).((((((((.(((((....)))))...)))))))) ( -48.80, z-score = -2.18, R) >droSim1.chr2R 5413281 105 - 19596830 GAAAAUUAGCCAAAUGGCCGCUAAGUGUUCGCUCUGCGCUUAAGCGGCAUAAAAAUG-UGCAACUUUCCA----UGCAGAUGCGCCUGCCGCACUCUCAUUUCUUUUUCU----- (((((...(((....)))...(((((((.......))))))).((((((.....((.-((((........----)))).)).....))))))............))))).----- ( -29.00, z-score = -1.37, R) >droSec1.super_1 4438774 104 - 14215200 GAAAAUUAGCCAAAUGGCCACUAAGUGUUCGCUCUGCGCUU-AGCGGCAUAAAAAUG-UGCAACUUUCCA----UGCAGAUGCGCCUGUCGCACUCUCAUUUCUUUUUCU----- (((((..((..((((((((.((((((((.......))))))-)).)))........(-(((.((......----(((....)))...)).))))...)))))))))))).----- ( -26.70, z-score = -1.38, R) >droEre2.scaffold_4845 3662818 105 + 22589142 GAAAAUUAACCAAAUGGCCGCUAAGUGUUCGCUCUGCGCUUAAGCGGCAUAAAAAUG-UGCAACUUUCCA----UGCAGAUGCGCCUGUCGCACUCUCAUUUCUUUUUCU----- (((((......(((((((((((((((((.......)))))).))))))........(-(((.((......----(((....)))...)).))))...)))))..))))).----- ( -28.30, z-score = -2.13, R) >droYak2.chr2R 18863977 105 + 21139217 AAAAAUUAGCCAAAUGGCCACUAAGUGUUCGCUCUGCGCUUAAGCGGCAUAAAAAUG-UGCAACUUUCCA----UGCAGAUGCGCCUGUCGCACUCUCAUUUCUUUUUCU----- ........(((....))).....(((((.(((((((((...(((..(((((....))-)))..)))....----)))))).)))......)))))...............----- ( -25.70, z-score = -1.29, R) >droVir3.scaffold_12823 2160089 89 + 2474545 AAAAAUUAGCAAAAUAGCCGCUUACAG-UCGCUUAGCAUUUAAGCGGUAUAAAAAUGUUGUAACUGUUGUAAGCGGCAAAUGCCCUUUUA------------------------- ........(((.....(((((((((((-((((((((...))))))))(((((.....)))))....)))))))))))...))).......------------------------- ( -26.00, z-score = -2.76, R) >droMoj3.scaffold_6496 26708671 89 + 26866924 CAAAAUUAGUAAAAUUGCCGCUAAGUG-CUGCUUAGCAUUUCAGCGGCAUAAAAAUGUUGCAACUUUUGUAAGCGGCAGAUGCCGUUGUA------------------------- (((((...((((...((((((((((((-((....))))))).)))))))........))))...)))))..((((((....))))))...------------------------- ( -30.60, z-score = -2.88, R) >consensus GAAAAUUAGCCAAAUGGCCGCUAAGUGUUCGCUCUGCGCUUAAGCGGCAUAAAAAUG_UGCAACUUUCCA____UGCAGAUGCGCCUGUCGCACUCUCAUUUCUUUUUCU_____ ................(((((..(((((.......)))))...)))))..........((((............))))..................................... (-10.33 = -10.38 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:56 2011