| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,853,390 – 6,853,497 |
| Length | 107 |
| Max. P | 0.718620 |
| Location | 6,853,390 – 6,853,497 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 83.96 |
| Shannon entropy | 0.32441 |
| G+C content | 0.45230 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -17.04 |
| Energy contribution | -17.46 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6853390 107 + 21146708 UGUGAAUGCGCACCCCUGACGAAA-CGUAGGAAAUUCUACUUACGAGCAGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- ......((((((..((((.((...-)))))).((((((.((....)).)))))).......)))))).(..(((.....)))..).(.((((......)))).)....---- ( -26.00, z-score = -0.99, R) >droYak2.chr2R 18861136 107 - 21139217 UGUGAAUGCGCACCCCUGACGAAA-CGUAGGAAAGUCUACUUACGAGCAGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- .((..((((.((....)).((((.-.(((((.((((.((((((.(.(((((....(((....).))......)))))))))))).)))).))))))))))))).))..---- ( -26.80, z-score = -0.83, R) >droEre2.scaffold_4845 3660067 108 - 22589142 UGUGAAUGCGCACCCCUGACGAAAACGUAGGAAAUUCUACUUACGAGCAGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- ......((((((..((((.((....)))))).((((((.((....)).)))))).......)))))).(..(((.....)))..).(.((((......)))).)....---- ( -27.20, z-score = -1.40, R) >droSec1.super_1 4436049 107 + 14215200 UGUGAAUGCGCACCCCUGACGAAA-CGUAGGAAAUUCUACUUACGAGCAGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- ......((((((..((((.((...-)))))).((((((.((....)).)))))).......)))))).(..(((.....)))..).(.((((......)))).)....---- ( -26.00, z-score = -0.99, R) >droSim1.chr2R 5410572 107 + 19596830 UGUGAAUGCGCACCCCUGACGAAA-CGUAGGAAAUUCUACUUACGAGCAGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- ......((((((..((((.((...-)))))).((((((.((....)).)))))).......)))))).(..(((.....)))..).(.((((......)))).)....---- ( -26.00, z-score = -0.99, R) >dp4.chr3 896976 83 - 19779522 ----------------------AAACUCCGG---CUCUGCUUACGAGCAGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGG---- ----------------------.....(((.---.((((((....))))))....((((..((.(((((..(((.....)))..)..)))).))...))))....)))---- ( -25.90, z-score = -2.05, R) >droAna3.scaffold_13266 573985 94 + 19884421 -------------CCCCGAUGAAA-CGUAGGAAAUUCUACUUACGAGCUGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- -------------...((......-((((((........))))))..........((((..((.(((((..(((.....)))..)..)))).))...))))....)).---- ( -22.00, z-score = -1.53, R) >droWil1.scaffold_180697 3171296 111 + 4168966 UUUAGUUGAACCCGUUCAACGAAA-CGAACAAAAUUCUACUUACGAGGAGAAUUGGCCAUUUGUGCAAUUGCUUUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGACUAC ..((((((...((((((.......-.))))..((((((.((....)).)))))))).((((((.((((.....)))).))))))..(.((((......)))).).)))))). ( -26.60, z-score = -2.27, R) >droVir3.scaffold_12823 2157934 97 - 2474545 ----------CCCGUUCAACGAAA-CGAACAAAAUUCUACUUACGAGUAGAAUUGGCCAUUUGUGCAAUUGCUUUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- ----------.((((((.......-.))))..(((((((((....))))))))))).((((((.((((.....)))).))))))..(.((((......)))).)....---- ( -26.10, z-score = -2.97, R) >droMoj3.scaffold_6496 26706549 97 - 26866924 ----------CCCGUUCAACGAAA-CGAACAAAAUUCUACUUACGAGUAGAAUUGGCCAUUUGUGCAAUUGCUUUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA---- ----------.((((((.......-.))))..(((((((((....))))))))))).((((((.((((.....)))).))))))..(.((((......)))).)....---- ( -26.10, z-score = -2.97, R) >droGri2.scaffold_15245 6327762 97 + 18325388 ----------CCCGCUCAACGAAA-CGAACAAAAUUCUACUUACGAGUAGAAUUGGCCAUUUGUGCAAUUGCUUUGCCUGAGUGAACUUGCCUAUUUUAGCAUGACGA---- ----------..((((((.....(-((((...(((((((((....))))))))).....)))))((((.....)))).))))))..(.(((........))).)....---- ( -22.40, z-score = -2.15, R) >consensus U_U___UG__CACCCCCGACGAAA_CGUAGGAAAUUCUACUUACGAGCAGAAUUGGCCAUUUGUGCAAUUGCUCUGCCUGAGUGAACUUGCCUAUUUUGGCAUGACGA____ ...................((...........((((((.((....)).)))))).((((..((.(((((..(((.....)))..)..)))).))...))))....))..... (-17.04 = -17.46 + 0.42)
| Location | 6,853,390 – 6,853,497 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.96 |
| Shannon entropy | 0.32441 |
| G+C content | 0.45230 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6853390 107 - 21146708 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCUGCUCGUAAGUAGAAUUUCCUACG-UUUCGUCAGGGGUGCGCAUUCACA ----......((((......)))).((.(((((.(((.(((((((((..(....)..))))..)))))....((((......)))).-....)))..))))).))....... ( -28.30, z-score = -1.53, R) >droYak2.chr2R 18861136 107 + 21139217 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCUGCUCGUAAGUAGACUUUCCUACG-UUUCGUCAGGGGUGCGCAUUCACA ----......((((......)))).((.(((((.(((.(((((((((..(....)..))))..)))))....((((......)))).-....)))..))))).))....... ( -28.30, z-score = -1.32, R) >droEre2.scaffold_4845 3660067 108 + 22589142 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCUGCUCGUAAGUAGAAUUUCCUACGUUUUCGUCAGGGGUGCGCAUUCACA ----......((((......)))).((.(((((.(((.(((((((((..(....)..))))..)))))....((((......))))......)))..))))).))....... ( -28.30, z-score = -1.51, R) >droSec1.super_1 4436049 107 - 14215200 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCUGCUCGUAAGUAGAAUUUCCUACG-UUUCGUCAGGGGUGCGCAUUCACA ----......((((......)))).((.(((((.(((.(((((((((..(....)..))))..)))))....((((......)))).-....)))..))))).))....... ( -28.30, z-score = -1.53, R) >droSim1.chr2R 5410572 107 - 19596830 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCUGCUCGUAAGUAGAAUUUCCUACG-UUUCGUCAGGGGUGCGCAUUCACA ----......((((......)))).((.(((((.(((.(((((((((..(....)..))))..)))))....((((......)))).-....)))..))))).))....... ( -28.30, z-score = -1.53, R) >dp4.chr3 896976 83 + 19779522 ----CCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCUGCUCGUAAGCAGAG---CCGGAGUUU---------------------- ----......((((......)))).....((((.(((...((....)).............((((((....)))))))---)).))))..---------------------- ( -24.40, z-score = -1.62, R) >droAna3.scaffold_13266 573985 94 - 19884421 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCAGCUCGUAAGUAGAAUUUCCUACG-UUUCAUCGGGG------------- ----........((....((((.(((((((((...((.(((((((((..(....)..)))))..)))))).))).))))))))))((-......)))).------------- ( -20.30, z-score = -1.00, R) >droWil1.scaffold_180697 3171296 111 - 4168966 GUAGUCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAAAGCAAUUGCACAAAUGGCCAAUUCUCCUCGUAAGUAGAAUUUUGUUCG-UUUCGUUGAACGGGUUCAACUAAA ..........((((......))))((((.((((.(((...((....)).(....))))((((((...(....).))))))..(((((-......)))))))))..))))... ( -23.30, z-score = -0.95, R) >droVir3.scaffold_12823 2157934 97 + 2474545 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAAAGCAAUUGCACAAAUGGCCAAUUCUACUCGUAAGUAGAAUUUUGUUCG-UUUCGUUGAACGGG---------- ----......((((......)))).(((((.....((((.....))))(((((((..((((((((((....))))))))..))..))-))).)))))))...---------- ( -24.90, z-score = -2.32, R) >droMoj3.scaffold_6496 26706549 97 + 26866924 ----UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAAAGCAAUUGCACAAAUGGCCAAUUCUACUCGUAAGUAGAAUUUUGUUCG-UUUCGUUGAACGGG---------- ----......((((......)))).(((((.....((((.....))))(((((((..((((((((((....))))))))..))..))-))).)))))))...---------- ( -24.90, z-score = -2.32, R) >droGri2.scaffold_15245 6327762 97 - 18325388 ----UCGUCAUGCUAAAAUAGGCAAGUUCACUCAGGCAAAGCAAUUGCACAAAUGGCCAAUUCUACUCGUAAGUAGAAUUUUGUUCG-UUUCGUUGAGCGGG---------- ----......((((......)))).(((((.....((((.....))))(((((((..((((((((((....))))))))..))..))-))).)))))))...---------- ( -22.70, z-score = -1.29, R) >consensus ____UCGUCAUGCCAAAAUAGGCAAGUUCACUCAGGCAGAGCAAUUGCACAAAUGGCCAAUUCUGCUCGUAAGUAGAAUUUCCUACG_UUUCGUCAGGGGUG__CA___A_A ......((((((((......)))............((((.....))))....))))).(((((((((....)))))))))................................ (-17.62 = -17.45 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:56 2011