| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,848,124 – 6,848,188 |
| Length | 64 |
| Max. P | 0.743146 |
| Location | 6,848,124 – 6,848,188 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 98.44 |
| Shannon entropy | 0.02645 |
| G+C content | 0.39687 |
| Mean single sequence MFE | -15.04 |
| Consensus MFE | -14.88 |
| Energy contribution | -15.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6848124 64 + 21146708 GGCCAGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAU ...((((((((((((..(((((((....))))))).)))))))))...)))............. ( -15.80, z-score = -1.26, R) >droSim1.chr2R_random 1989911 64 + 2996586 GGCCAGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAU ...((((((((((((..(((((((....))))))).)))))))))...)))............. ( -15.80, z-score = -1.26, R) >droSec1.super_1 4430998 64 + 14215200 GGCCAGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAU ...((((((((((((..(((((((....))))))).)))))))))...)))............. ( -15.80, z-score = -1.26, R) >droEre2.scaffold_4845 3654993 64 - 22589142 GGCCCGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAU (((...(((((((((..(((((((....))))))).))))))))))))................ ( -15.30, z-score = -1.32, R) >droYak2.chr2R 18855898 64 - 21139217 GGCCCGUAAGCACGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAU (((...((((((.((..(((((((....))))))).)).)))))))))................ ( -12.50, z-score = -0.81, R) >consensus GGCCAGUAAGCAGGACAGCAUUAUCAUUGUAAUGCAUUUUGCUUAGCUCUGACUUGACUUUUAU (((...(((((((((..(((((((....))))))).))))))))))))................ (-14.88 = -15.08 + 0.20)
| Location | 6,848,124 – 6,848,188 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 98.44 |
| Shannon entropy | 0.02645 |
| G+C content | 0.39687 |
| Mean single sequence MFE | -15.08 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.44 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6848124 64 - 21146708 AUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACUGGCC ...........(((((...((((((....((((((......)))))).....))))))))))). ( -15.90, z-score = -1.94, R) >droSim1.chr2R_random 1989911 64 - 2996586 AUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACUGGCC ...........(((((...((((((....((((((......)))))).....))))))))))). ( -15.90, z-score = -1.94, R) >droSec1.super_1 4430998 64 - 14215200 AUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACUGGCC ...........(((((...((((((....((((((......)))))).....))))))))))). ( -15.90, z-score = -1.94, R) >droEre2.scaffold_4845 3654993 64 + 22589142 AUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACGGGCC ...........(((...(.((((((....((((((......)))))).....))))))).))). ( -13.30, z-score = -0.74, R) >droYak2.chr2R 18855898 64 + 21139217 AUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCGUGCUUACGGGCC ...........(((...(.((((((....((((((......)))))).....))))))).))). ( -14.40, z-score = -1.15, R) >consensus AUAAAAGUCAAGUCAGAGCUAAGCAAAAUGCAUUACAAUGAUAAUGCUGUCCUGCUUACUGGCC ...........(((((...((((((....((((((......)))))).....))))))))))). (-14.04 = -14.44 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:54 2011