| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,845,534 – 6,845,638 |
| Length | 104 |
| Max. P | 0.970938 |
| Location | 6,845,534 – 6,845,638 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.60 |
| Shannon entropy | 0.39170 |
| G+C content | 0.43989 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -17.04 |
| Energy contribution | -17.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6845534 104 + 21146708 CCAACACUCAUGAGUCACAAAUCAUGGGCGGAGUGGAAACACGGCGAGAAAAAUGGGAUAUUAACUGAAACGGAAUAAUAAUAAUUUUAUUGCCAAUAAAAAGA-- ....(.(((((((........))))))).)..(((....)))(((((..(((((....(((((.(((...)))..)))))...))))).)))))..........-- ( -23.90, z-score = -3.40, R) >droYak2.chr2R 18853264 103 - 21139217 CCAGCACUCAUGAGUCACAAAUCAUGGGUGGAGUGGGAACACAGCGAGAAAAAUGGGGUAUGAACUAAAA-CGGA-AGCUGCCAU-CACCAGGCUUUUGUUAUAAU (((.(((((((((........)))))))))..(((....)))...........)))............((-((((-((((.....-.....))))))))))..... ( -29.40, z-score = -1.95, R) >droEre2.scaffold_4845 3652445 90 - 22589142 CCAACACUCAUGAGUCACAAAUUAUGGGCGCAGUGAGAGCACUGCGAGAAAAGUGGUGUAUGAACUGAAA-CGAA-AGCUACCAUUCACCAG-------------- ......(((((((........)))))))(((((((....))))))).......(((((.(((..((....-....-))....))).))))).-------------- ( -24.00, z-score = -1.81, R) >droSec1.super_1 4428379 95 + 14215200 CCAACACUCAUGAGUCACAAAUCAUGGGCGGAGUGGAAACACUGCGAGAAAAGUGGGAUAUUAACUGAAA-CGGA-AGCUACCAUUCACCAGGCAUU--------- ((.((.(((((((........)))))))((.((((....)))).))......)).)).......(((...-..((-(.......)))..))).....--------- ( -23.30, z-score = -1.39, R) >droSim1.chr2R_random 1987284 96 + 2996586 CCAACACUCAUGAGUCACAAAUCAUGGGCGGAGUGGAAACACUGCGAGAAAAGUGGGCUAUUAUUUAAAAACGGA-AGCUACCAUUCACCAGGCAUU--------- ((..(.(((((((........))))))).)((((((...((((........))))((((.(..((....))..).-)))).))))))....))....--------- ( -24.90, z-score = -2.05, R) >consensus CCAACACUCAUGAGUCACAAAUCAUGGGCGGAGUGGAAACACUGCGAGAAAAGUGGGAUAUUAACUGAAA_CGGA_AGCUACCAUUCACCAGGCAUU_________ (((...(((((((........)))))))((.((((....)))).)).......))).................................................. (-17.04 = -17.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:52 2011