| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,845,423 – 6,845,496 |
| Length | 73 |
| Max. P | 0.745361 |
| Location | 6,845,423 – 6,845,496 |
|---|---|
| Length | 73 |
| Sequences | 7 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 74.21 |
| Shannon entropy | 0.47017 |
| G+C content | 0.46316 |
| Mean single sequence MFE | -23.69 |
| Consensus MFE | -11.14 |
| Energy contribution | -11.70 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6845423 73 + 21146708 -------GUUAUCUACUAUUUUCCCUUCAUGUUAGUGCAUUUGAUUGGCGCCAAUUAUGCAG-------GCAGAAAGGGGCGUAGUU -------.......(((((..((((((..((((..(((((..(((((....)))))))))))-------)))..)))))).))))). ( -22.00, z-score = -2.17, R) >droAna3.scaffold_13266 566718 68 + 19884421 -----------UCUCCCUCAAACC-UUAAUCCUUUUGCCGUUGAUUGGCGCCAAUUAUGCAG-------GCAUAAAGGGGCGUGGCU -----------...........((-....((((((((((..((((((....))))))....)-------))).))))))....)).. ( -19.40, z-score = -0.48, R) >droYak2.chr2R 18853157 73 - 21139217 -------GUUAUCUGCUCCGUUCCCUUCAUGUUAGUGCAUUUGAUUGGCGCCAAUUAUGCAG-------GCAGAAAGGGGCGUGGCG -------.......((..(((.(((((..((((..(((((..(((((....)))))))))))-------)))..))))))))..)). ( -26.70, z-score = -2.07, R) >droEre2.scaffold_4845 3652336 73 - 22589142 -------GUUAUCUGCUUCGUUCCCUUCAUGUUGGUGCAUUUGAUUGGCGCCAAUUAUGCAG-------GCAGAAAGGGGCGUGGCA -------.......(((.(((.(((((..((((..(((((..(((((....)))))))))))-------)))..)))))))).))). ( -26.10, z-score = -1.62, R) >droSec1.super_1 4428268 73 + 14215200 -------GUUAUCUACUACGUUCCCUUUAUGUUAGUGCAUUUGAUUGGCGCCAAUUAUGCAG-------GCAGAAAGGGGCGUGGUG -------......((((((((.((((((.((((..(((((..(((((....)))))))))))-------))).)))))))))))))) ( -28.40, z-score = -3.73, R) >droSim1.chr2R_random 1987173 73 + 2996586 -------GUUAUCUACUACGUUCCCUUCAUGUUAGUGCAUAUGAUUGGCGCCAAUUAUGCAG-------GCAGAAAGGGGCGUGGUG -------......((((((((.(((((..((((..((((((..((((....)))))))))))-------)))..))))))))))))) ( -28.10, z-score = -3.35, R) >droWil1.scaffold_180697 3159622 87 + 4168966 UUUAUUUUUCACCCAAAAAAAAAGAUUGUUUUUUUCGGCUAUGAUUGGCGCCAAUUAUGCAGUGGCUAAAAAAAAGUAGGCGUGGUU ........((((((...((......)).(((((((..((((((((((....))))).....)))))..)))))))...)).)))).. ( -15.10, z-score = 0.66, R) >consensus _______GUUAUCUACUACGUUCCCUUCAUGUUAGUGCAUUUGAUUGGCGCCAAUUAUGCAG_______GCAGAAAGGGGCGUGGUG ..............(((....((((((..(((...((((..((((((....))))))))))........)))..))))))...))). (-11.14 = -11.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:52 2011