| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,845,294 – 6,845,365 |
| Length | 71 |
| Max. P | 0.958295 |
| Location | 6,845,294 – 6,845,365 |
|---|---|
| Length | 71 |
| Sequences | 6 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 73.73 |
| Shannon entropy | 0.44490 |
| G+C content | 0.46443 |
| Mean single sequence MFE | -20.05 |
| Consensus MFE | -11.33 |
| Energy contribution | -10.97 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.958295 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 6845294 71 + 21146708 ------------UUUUGGUCAGCGGAUAAAAACGGAAAGUAGAAAGCAG----GCAACUUACCAGAAGGCAACGGAAGUUGCACGAA ------------(((((((...((........)).............((----....)).))))))).(((((....)))))..... ( -17.80, z-score = -2.60, R) >droSim1.chr2R_random 1986308 75 + 2996586 ------------UUUUGGUUAGCGGAUAAAAACGGAAAGUAGAAAGCAGGCAGGCAACUUACCAGAAGGCAGCGGAAGUUGCACGAA ------------(((((((.((((........))...........((......))..)).))))))).(((((....)))))..... ( -19.20, z-score = -2.32, R) >droSec1.super_1 4428137 75 + 14215200 ------------UUUUGGUCAGCGGAUAAAAACGGAAAGUAGAAAGCAGGCAGGCAACUUACCAGAAGGCAGCGGAAGUUGCACGAA ------------(((((((.((((........))...........((......))..)).))))))).(((((....)))))..... ( -19.30, z-score = -2.16, R) >droEre2.scaffold_4845 3652208 71 - 22589142 ------------UUUUGGCCAGCGGAUAAAAACGGAAAGUAGAAAACAG----GCAACUUACCAGAAGGCAGCGGAAGUUGCACGAA ------------((((((....((........)).............((----....))..)))))).(((((....)))))..... ( -16.70, z-score = -1.65, R) >droYak2.chr2R 18853020 71 - 21139217 ------------UUUUGGUCAGCGGAUAAAAACGGAAAGUAGAAAACAG----GCAACUUACCAGAAAGCAGCGGAAGUUGCACGAA ------------(((((((...((........)).............((----....)).))))))).(((((....)))))..... ( -18.00, z-score = -2.82, R) >droPer1.super_34 77132 82 - 916997 UUUUUGCUGCAAUUUCUGCUGGUUAAUAAUUUUGAUGGCCGCCAAUUAU----GCAGGG-GCCAUGCAGCAAGGGGCGUGGCAGGAA .((((((..(..((..((((((((((.....)))))((((.((......----...)))-)))...)))))..))..)..)))))). ( -29.30, z-score = -1.06, R) >consensus ____________UUUUGGUCAGCGGAUAAAAACGGAAAGUAGAAAGCAG____GCAACUUACCAGAAGGCAGCGGAAGUUGCACGAA .............((((................((.((((................)))).)).....(((((....))))).)))) (-11.33 = -10.97 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:51 2011