| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,833,792 – 6,833,890 |
| Length | 98 |
| Max. P | 0.885823 |
| Location | 6,833,792 – 6,833,890 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.60 |
| Shannon entropy | 0.53556 |
| G+C content | 0.39340 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -12.82 |
| Energy contribution | -12.95 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6833792 98 - 21146708 -----UUCCUACUUCGUGUGUGUGCGUGCGUUUGGGACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAGAACUGUU -----.(((((...((..((....))..))..)))))........((((((((...........(((((((((.....))))))))).))))))))....... ( -24.40, z-score = -1.60, R) >droPer1.super_34 74327 93 + 916997 ----UGCCUCCUUCAACGUGGGG------GCGACGCACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGCCAUUGACACUGUUGACAGAAGAGUG ----.((((.(((((((((((((------..((((...........))))..))))))......(((((((((.....))))))))).))))).)).)).)). ( -25.80, z-score = -1.72, R) >dp4.chr3 888116 85 + 19779522 ------------CCAACGUGGGG------GCGACGCACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGCCAUUGACACUGUUGACAGAAGAGUG ------------.((((((((((------..((((...........))))..))))))......(((((((((.....))))))))).))))........... ( -22.20, z-score = -1.19, R) >droAna3.scaffold_13266 563538 93 - 19884421 ----UUUCUCGUUCAGUGUAUGC------GUACGAGACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAGAAUUGUU ----..((((((...((....))------..))))))....(((.((((((((...........(((((((((.....))))))))).)))))))).)))... ( -22.10, z-score = -2.06, R) >droEre2.scaffold_4845 3648281 92 + 22589142 -----UUGCUGCUUCGUGUGUCU------GUUUGGGACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAGAACUGUU -----...............(((------((((((((...............))))).......(((((((((.....)))))))))....))))))...... ( -20.96, z-score = -1.34, R) >droYak2.chr2R 18848921 103 + 21139217 CCCCCUCACCACUAUGUGUGUGUGUGUGCGUUUGAGACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAGAACUGUU ....(.((((((.....))).))).)...(((((.....))))).((((((((...........(((((((((.....))))))))).))))))))....... ( -21.20, z-score = -1.18, R) >droSec1.super_1 4424126 98 - 14215200 -----UUCCUGCUUCGUGUGUGUGCUUGCGUUUGGGACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAGAACUGUU -----.(((((...((((........))))..)))))........((((((((...........(((((((((.....))))))))).))))))))....... ( -19.30, z-score = -0.11, R) >droSim1.chr2R 5402456 98 - 19596830 -----UUCCUCCUUCAUGUGUGUGCGUGCGUUUGGGACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAGAACUGUU -----....((((..(((..(....)..)))..))))........((((((((...........(((((((((.....))))))))).))))))))....... ( -21.70, z-score = -0.83, R) >droMoj3.scaffold_6496 26697196 87 + 26866924 ---------UUGCCAGUGCGAUG------AGCUGGGU-CAGAAUAUUGUUAAUCCUAUUGAUUUGUGUUAAUGAUUGUCACUGACACUGUUGACCAAACAACU ---------...(((((......------.)))))((-(((...((..((((..(.........)..))))..)).....)))))...((((......)))). ( -18.50, z-score = -0.40, R) >droVir3.scaffold_12823 2148791 88 + 2474545 ---------UUGACAGUCCGAUG------UGUGAGACACAGAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACCAAAUAGCU ---------((((((((....((------((.....))))....)))))))).....(..((..(((((((((.....))))))))).))..).......... ( -21.70, z-score = -2.07, R) >droWil1.scaffold_180697 3154922 83 - 4168966 --------UCACUCUUUUUGGUG-----CAUGUGUGAGUCAAAUAUUGUUAAUCCUAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAG------- --------((((.(.........-----...).))))(((((........((((.....)))).(((((((((.....)))))))))..)))))..------- ( -18.00, z-score = -0.90, R) >consensus _____UUCCUACUCAGUGUGUGG______GUUUGGGACCCAAAUAUUGUUAAUCCCAUUGAUUUGUGUUAAUGAUUGUCAUUGACACUGUUGACAGAACUGUU .............................................((((((((...........(((((((((.....))))))))).))))))))....... (-12.82 = -12.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:50 2011