| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,830,845 – 6,830,916 |
| Length | 71 |
| Max. P | 0.844042 |
| Location | 6,830,845 – 6,830,916 |
|---|---|
| Length | 71 |
| Sequences | 8 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 66.48 |
| Shannon entropy | 0.65174 |
| G+C content | 0.55845 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -7.20 |
| Energy contribution | -7.69 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.844042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6830845 71 - 21146708 UGUGUGAGUUUCCAAUGCAGCAGCUGCUGUUGCUGCGAAAAACCCCCCACCCGGCUUCCGGGAAAAUCAUC ...((((.(((((..(((((((((....)))))))))..............(((...)))))))).)))). ( -24.80, z-score = -3.05, R) >droSim1.chr2R 5399524 70 - 19596830 UGUGUGAGUUUCCAAUGCAGCAGCUGCUGUUGCUGCGAAAAA-CCCCCACCCGGCUGCCGGGAAAAUCAUC ...((((.(((((..(((((((((....))))))))).....-........(((...)))))))).)))). ( -24.80, z-score = -2.64, R) >droSec1.super_1 4421208 70 - 14215200 UGUGUGAGUUUCCAAUGCAGCAGCUGCUGUUGCUGCGAAAAA-CCCCCACCCGGCUGCCGGGAAAUUCAUC ...((((((((((..(((((((((....))))))))).....-........(((...))))))))))))). ( -28.50, z-score = -3.87, R) >droYak2.chr2R 18845447 70 + 21139217 UGUGUGAGUUUCCAAUGCAGCAACUGCUGUUGCUGCGAGAAA-CCCCCACCCAGCUUCCGGGAAAAUCAUC ...(((((((((...(((((((((....))))))))).))))-).....(((.......)))....)))). ( -23.50, z-score = -3.15, R) >droEre2.scaffold_4845 3645345 70 + 22589142 UGUGUGAGUUUCCAAUGCAGCAACUGCUGUUGCUGUGGAAAA-CCCCCAUCCAGCUUCCGGGAAAAUCAUC ...((((.(((((...((((((((....))))))))((((..-............)))).))))).)))). ( -22.64, z-score = -2.79, R) >droAna3.scaffold_13266 561001 59 - 19884421 UGUGUGAGUUUCCAAUGCAGCACCACCACCAACUUC-------UCCCUUUCCGGC-----GGAAAAGCAUC .((((..((.......)).)))).........(((.-------(((((....)).-----))).))).... ( -7.20, z-score = 1.25, R) >dp4.chr3 885585 60 + 19779522 AGGGAGAAAACCGAGUG-GGCUCCUGCCGUCGAGGC-------CCCGUGCCUCUCAUUUGGUGGCAUC--- .....(...((((((((-(((....)))...(((((-------.....))))).))))))))..)...--- ( -22.90, z-score = -0.78, R) >droPer1.super_34 70682 60 + 916997 AGGGAGAAAAUCGAGUG-GGCUCCUGCCGUCGAGGC-------CCCGUGCCUCUCAUUUGGUGGCAUC--- .....(...((((((((-(((....)))...(((((-------.....))))).))))))))..)...--- ( -20.30, z-score = -0.11, R) >consensus UGUGUGAGUUUCCAAUGCAGCACCUGCUGUUGCUGCGAAAAA_CCCCCACCCGGCUUCCGGGAAAAUCAUC ...((((.(((((.....(((....)))...((((................)))).....))))).)))). ( -7.20 = -7.69 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:48 2011