| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,825,029 – 6,825,138 |
| Length | 109 |
| Max. P | 0.667168 |
| Location | 6,825,029 – 6,825,138 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 63.74 |
| Shannon entropy | 0.58869 |
| G+C content | 0.31565 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -8.96 |
| Energy contribution | -8.15 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6825029 109 + 21146708 GUCGAUGGCAAAGGAUGUC--------AUCUUGCAUAUUGAUUUAGGUG-UCCUUCUUAGGUUCAAAAUAGCCGGUAUAUA-UAUAUUAAAGAGUUCAUAAUAUGUAACCGCAUAUUCA ...(((((((.....))))--------))).(((...((((((((((..-.....)))))).)))).......(((...((-(((((((.........)))))))))))))))...... ( -22.00, z-score = -0.71, R) >droSec1.super_1 4415443 118 + 14215200 GUCGAUGGCAAAGGAUGUCCUAAAGACAUCUUGCAUAUUGAUUUAGGUGGUCUUUCUAAGGUUACAAAUAGCCGGUAGGUA-AAUAUUAUAAAGUUCGUAAUAUGUAACGGCAUAUUUA ((((((((((..(((((((.....)))))))))).)))))))....(((..((.....))..)))(((((((((.....((-.(((((((.......))))))).)).)))).))))). ( -30.40, z-score = -2.64, R) >droSim1.chr2R 5393741 118 + 19596830 GUCGAUGGCAAAGGAUGUCCUAAAGACAUCUUGCAUAUUGAUUUAGGUGGUCUUUCUAAGGUUACAAAUAGCCUGUAUAUA-AAUAUUAUAAAGUUCAUAAUAUGUAACAGCGUAUUUA ((((((((((..(((((((.....)))))))))).)))))))....(((..((((.((((((((....))))))((((...-.)))))).))))..)))(((((((....))))))).. ( -26.50, z-score = -1.73, R) >droMoj3.scaffold_6496 26689453 103 - 26866924 UUCAAUUACUAAAUAAUUU-----AAAAUGUUAAAUGAAUACACAAGAUGUACAACUGGAAAUGGAACUAGAAUGGAAAUGGAACGUCAAAGUAUUUAUAA-GCAUAAC---------- ...................-----...(((((..((((((((....(((((.(..((((........)))).((....)).).)))))...)))))))).)-))))...---------- ( -13.70, z-score = -1.16, R) >consensus GUCGAUGGCAAAGGAUGUC_____GACAUCUUGCAUAUUGAUUUAGGUGGUCCUUCUAAGGUUACAAAUAGCCGGUAUAUA_AAUAUUAAAAAGUUCAUAAUAUGUAAC_GCAUAUUUA ......(((..((((((((.....)))))))).......((((.....))))..................))).............................................. ( -8.96 = -8.15 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:46 2011