| Sequence ID | dm3.chr2R |
|---|---|
| Location | 6,817,176 – 6,817,226 |
| Length | 50 |
| Max. P | 0.632514 |
| Location | 6,817,176 – 6,817,226 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.40000 |
| Mean single sequence MFE | -9.00 |
| Consensus MFE | -9.00 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.632514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 6817176 50 - 21146708 GCUGACUAAGUUUUAAUUGAACUUUAGUGAGUUCCAAAGCGCCAACUUCG (((.(((((((((.....)))).))))).))).................. ( -9.00, z-score = -1.00, R) >droSim1.chr2R_random 1962804 50 - 2996586 GCUGACUAAGUUUUAAUUGAACUUUAGUGAGUUCCAAAGCGCCAACUUCG (((.(((((((((.....)))).))))).))).................. ( -9.00, z-score = -1.00, R) >droSec1.super_1 4407415 50 - 14215200 GCUGACUAAGUUUUAAUUGAACUUUAGUGAGUUCCAAAGCGCCAACUUCG (((.(((((((((.....)))).))))).))).................. ( -9.00, z-score = -1.00, R) >droYak2.chr2R 18828792 50 + 21139217 GCUGACUAAGUUUUAAUUGAACUUUAGUGAGUUCCAAAGCGCCAACUUCG (((.(((((((((.....)))).))))).))).................. ( -9.00, z-score = -1.00, R) >droEre2.scaffold_4845 3631859 50 + 22589142 GCUGACUAAGUUUUAAUUGAACUUUAGUGAGUUCCAAAGCGCCAACUUCG (((.(((((((((.....)))).))))).))).................. ( -9.00, z-score = -1.00, R) >consensus GCUGACUAAGUUUUAAUUGAACUUUAGUGAGUUCCAAAGCGCCAACUUCG (((.(((((((((.....)))).))))).))).................. ( -9.00 = -9.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:13:45 2011